LOC110538885 (LOC106602057)


Basic Information

Item Value
gene id LOC110538885
gene name LOC106602057
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97715738 ~ 97740971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939415.1
TGCCAACAGGTGGCAGTAACTGAACGAGTCAACTCTTCAAAAGGCAGGCAACTAGTTTTCTGAACGGCGTGTGAGATAGATTTCCTTCCACACAGCAACAATGGCAGCCTCCAATACCAATGTGATACGGGTGCGATTGTATTTTGATTACCCGCCGCCCTCGGTATCCGACTGTCGCATGTGCTGGGTACTCGTGGATCTGAACAAATGCCGGGTGGTAGCAGACATAGCCAGCGTGATCAGGGAAAAATTCGACTTCAGTCGCAGGAGCATTTTGAGTCTGTTCATTGAAGACTGCTACCTGCCGCACACAGAGAGCGTCTACGTAGTCCGAGATAACGACAGCATCAGagtcaaggTGGACACCCTAACCCTTTCGAGTGGAAGTCAGCCGAACACATCTGCTGTGAAGtccaagaagaggaggagagctgccgaggaggaggaggaggagcccaCACAGAACCGAGTGAGTGAAGAgtggaagaaaaagaagaagagaaaggagagtCAGGAGGCCGATTCCAACCAGGCTGCGgttgaagagaggaggaaagaagacaagaagaaacagaagaagaaagaTAAGAAGGTGTCGACCAAAACCACTGCCTCGTCCACAGGACCCCCTCCCACCTCGTCCACAGGACCCTCTCCCACCTCATCCACAGGACCCTCTCCCACTGTAGTCAAAGCGGACAAAAACACCAAGAAGGCTCCAGCGGCCACAGCAGTATCTGTTAACGGTAAAGCCACAGCAGTATCTGTTAACGGTAAAGCCACAGCAAAGACCCCGAATGGGGAAACGGACGACTCTTCTGATTCCAGTGAAAGCAGTAGTGAGGAGGAGGCCCCCAGTAAAACCCCCATGCAGAAACTACCCCCCAAATCACACTCTGCTAGCTCTACACCCCCTGTCACATCTAAAGCCACCCCTGTAGTTAAACCCCGAGTCCCCATTAAGAAACCACGCCCACCTCCCTCATCATCTGATTCGGACTCGTCAGACTCATCGGGTGACGATGCCTCTAGCAAAGCCACCACAGCCAAACCTCCCGTTAAAAACCAAACTCCTCTATCCAAACCTGCTGCCACTCCTCCTACCACTACACCCACCGGCTCCGGAGCTGGTCCTAGAGACAAAACCACCCCCTCCAGGCCCAGCCTCCCTTCCTCAGGTCCCAGGACCTCTGTATCCCCTGGCCAGAGAGCTAATGCTCCAGGGCCAGGCTCTACCCCAGCAGTGCAGAAGGCCCACAGGAGGCCTGAGAGCCCATgctctagtagtagtagtgaggAGGAGATCCAGCTGGTTATCAAACAACCGGGCCTGGGGATGGGAATAGTCCCTGCTATGGCAGCACAACCCACCTGGAGAGGCAGGGGAAGCCCTAGGGGTGcggagagaggtgggggtagagggattAGGGGTAGAGGGGATGGAGGCCAGAGTTGGGGTGGTGGAGGTAGGGGGGTTAGAGGGGAGTGGGACAGGGGTCCTCgtggtgggggtagaggtggggaGTGGGACAGGGGTCCTCGTGGGggtaaaggagggagaggggaagatgcAGGGTTTTATTTCAACTATGAAGGTGGACAGCGACAGCAGACTCCTCAGCCACCATCGTACCAGAAGGACTCCCTGAATAACAGCTCTGTGGTGTTCCAGaaccCATCAGAGAGTGTCCCCAAGAGGGACTACAGTGAGATGCCCCTCCTAGCTGCTCCCCCTCAGGACGGACAGAAGATCGCCTTCAAGctGCTGGAGCTGACAGAGAACTACACACCAGAGGTGTCTGAGTATAAAGAGGGGAAAATCATTCATTTCGACCACAGCACCAAACAGATTGAGCTAGAGCTGCTCTCTGCTTATCAAGCGCCGGTGGAGCCGGGGAAGTTTGACCTGGTGTATCAGAACGCCGACGGATCCGAGAGTGTAGAGTACGCTGTGTCCCGGGGCTCCAGGgtgaCTGAATGTTGGGACTCACTGCTCGAACCCAGGCTAGTTGTTGGGAATTTGAGCTGAGGAACAAGATGGACGTTCTTGGTCGACTTGGACCaggcatttctaacacactggcccatttCCCACACTTGAATTGCCCAGTATTGGCCAAATTATAATAATTCAGCACACAACCCCAATTTAGACTAAGTTAAAGATGGACCAGTCCAAATCTGGCATTTGCCGGATCTGCCCCATGGCCAGTCCGTTTCTGGTTGGATGGACTGGGGCTTGTTCTGACACCTCCATAGACAGTTTACCCTGGACCCAGATTAAGCTGGAGATGTTCCATTCACTATGATTATGTTTAGTTCAGGAGTAGAGCctttaatctgggtctgggaaaccagccttaCTGTCAACATGTGGTTGACTCTACTAATTcaggatgttttttttatttttatggagATTTGTTAAATTCAATAGTTTTGCGTTTCAGTTTATTTCCTCAGTAGACAAGAGTTAAAATGAAATTGACCAGAACCTTGGATTCAGCTCATCAAAGTCTGGATTAAAGCTATTGATTAGTTTTAGTTCTGGGTGTGCTGAGCACCATTTTAATGACCCACTTAAACACCTTCTAATGTTGTATTGTGGAAGGGAGGGTACAGGCTAGGTTGCATAAGTACCTTCAAATGTTATTTAATCTTTGGtctctttacttttatttttttttacacattgaTATAACTGTGAATGTCCCATcttgcattttttttaaaacttgttTGTAAGATAATAAAGTTTGATATCCTATGACC

Function

NR:

description
coilin

GO: NA

KEGG:

id description
K13150 COIL, CLN80; coilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939415.1 True 2772 mRNA 0.51 7 97715738 97740971

Neighbor

gene id symbol gene type direction distance location
LOC110539076 LOC106606268 coding downstream 483 97620303 ~ 97715255 (-)
LOC110538805 LOC106592410 coding downstream 149285 97527207 ~ 97574077 (-)
LOC110538797 abcc1 coding downstream 206555 97450528 ~ 97509183 (-)
LOC118937836 NA coding downstream 268523 97443985 ~ 97447215 (-)
LOC118937808 LOC106601922 coding downstream 291405 97414572 ~ 97424333 (-)
LOC110538882 LOC106601977 coding upstream 23218 97764189 ~ 97787224 (-)
LOC110487093 LOC105031326 coding upstream 124683 97864865 ~ 97878576 (-)
LOC110487090 LOC106606200 coding upstream 176766 97917737 ~ 97943871 (-)
LOC110487083 tigd1 coding upstream 206307 97947278 ~ 97949231 (-)
LOC110485313 LOC106535622 coding upstream 218782 97959753 ~ 97974748 (-)
G1131653 NA non-coding downstream 6217 97708788 ~ 97709521 (-)
G1131639 NA non-coding downstream 56364 97658540 ~ 97659374 (-)
G1131628 NA non-coding downstream 83251 97630348 ~ 97632487 (-)
G1131625 NA non-coding downstream 96558 97615964 ~ 97619180 (-)
G1131360 NA non-coding downstream 101970 97613530 ~ 97613768 (-)
G1131701 NA non-coding upstream 42194 97783165 ~ 97783375 (-)
G1131702 NA non-coding upstream 43472 97784443 ~ 97784734 (-)
G1131669 NA non-coding upstream 51902 97792873 ~ 97793378 (-)
G1131705 NA non-coding upstream 57236 97798207 ~ 97798453 (-)
G1131707 NA non-coding upstream 66960 97807931 ~ 97808469 (-)
G1131656 NA other downstream 2622 97712634 ~ 97713116 (-)
G1131270 NA other downstream 253467 97461813 ~ 97462271 (-)
G1131255 NA other downstream 282320 97430085 ~ 97433418 (-)
G1131230 LOC106601922 other downstream 291618 97383100 ~ 97424120 (-)
G1131720 NA other upstream 111815 97852786 ~ 97853593 (-)
G1131666 NA other upstream 116628 97857599 ~ 97860518 (-)
LOC118936513 cog1 other upstream 517911 98230363 ~ 98259687 (-)

Expression


Co-expression Network