LOC110487093 (LOC105031326)


Basic Information

Item Value
gene id LOC110487093
gene name LOC105031326
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97864865 ~ 97878576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939419.1
GACGTCGCAGTTCTCATACGTGCCGGACTGAACGTGATAGAACAGTACAAGGTGGCAGAGAGAGCGCCCAGGATAGCATACAGACCGTTCTGAGATCCGCGAGCAGAGCATCCCTAAGaTCCAAAGTTAGAGGACCATGGGAGGTGTGGTGGTGGACGAGGGACCTGGGGGGGTGAAGGCACCAGACGGGGGTTGGGGCTGGGCTGTGCTGTCCGGCTGTTTCGTCATCACTGGGTTCTCCTACGCCTTCCCCAAGGCTGTCAGCGTGTTCTTCAAGGAACTGATCAGAGAGTTCGACGTGGGGTACAGCGACACAGCATGGATCTCATCTATTCTGCTGGCTATGCTGTACGGCACAGGTCCTCTGTGCAGTGTGTTGGTGAATCGTTACGGGTGTCGTCCGGTGATGATGGTGGGGGGACTTTTTGCCTCTCTGGGGATGattctgtcttccttctccaccAGCATCATCCACATCTACCTCTCCACTGGAGTCATTACAGGTCTGGGCCTGGCGTTGAACTTTCAGCCGTCTCTGATCATGCTGAATCGCTACTTCAGTGAGAAGAGGCCCCTGGCTAACGGCCTGGCTGCTGCTGGGAGTCCTGTGGCCCTCTGCTGCTTATCACCTCTGGGACAGCTGTTGCAGTACCAGTACGGTTGGAGAGGAGGCTTCCTCATCCTCGGAGGGCTCCTGCTCAACTGCTGCGCCTGCGCGGCCCTCATGAGGCCCCTAGTGGCCCCTCCTAAACCCCCCCAGCGGGAAGACGTTGAGAAGGAGGGAAAAGAGTTGGAGGTAGAGAAGACCCAGTCCAGACCCAAACCTCTCCTGGACTTCAGTGTGTTTAAGGACAGGGGTTTCCTGATCTACACCATAGCTGCATCTATTATGGTTCTGGGTCTGTTTGTGCCGCCGGTGTTCGTGGTGAGCTATGCCAAAGAGCTGGGCAACGAAGACACCAAGTCGGCCCTCCTCCTATCCATCCTCGGCTTCATAGACATCTTCGCCCGGCCCACCTGTGGCATCATCGCTGGGCTGAAGTGGGTCAGGCCCAGAGTTGTTTACCTGTTCAGCTTTGCCATGATCTTTAATGGATGCACTGACCTGGTGGGATCTCAGGCGAAGGACTACCCGTCTCtggtggtgttctgtgtgttcttcGGGATCTCCTACGGCATGGTCGGGGCGCTACAGTTTGAGGTTCTCATGGCGATCGTTGGCACGGAGAAATTCTCCAGCGCTATAGGACTGGTGTTGCTCATGGAAGCTATTGCTGTGCTGGTGGGACCACCTGGAGCAGgtCGGCTGCTGGACGCCACTAAGAACTACATGTACGTGTTCCTGCTGGCAGGAATTGAGGTGGTCCTCGCCGCCGTGGTCCTGGCCACGTGTAACTTCCTGTTCATCAGGAAGAAGCCCTCGGAACCCGCTGCGGAACTGGAGAACGGAACGGTTTCCGCGGAAATGGAGCTTCTCAACAAGCCTGTTGCcgctgaggaagaggaggaggaggaagtagagAAGGGGGAACAAGAGGTGAAGGAgatgaaggagaaagaggagaagaagaaagaggaggtgaaggagatgaaggagaaagaggagaaggagaaagaggaggtgaaggagaaagaggaggtgaAGGCgatgaaggagaaagaggaggtgaaggagatggaggaggaagcgGTTGAGAAAGCAAAGGAGGACGAGGAAGACAGTGAGAAAAAGAAGGAGGAGATCAGGCCTGAGAGCGTAATGGTGGTCTCAGAAGAAGTGGAGAGCTTCCTTAAAGAACCAGAATAACAAAATGGAAGAGAACCTGGCACAGAACAAACTACAGACTTTAAACTTAAACACTGCCAAGGGCACTTTAAAGGGCACTAAGAATTGTACTCCGCAGTGTACTTTGAAGGGCACTAAAAAGTGTACTTAGAAGTGGACCAAGAAAGTGCTTAGAGAAGCATACTGGGGAAGACACAGCTGGTCCTAGCAGTATCCTCCTgtatgtagttgtgttgttgtgttgttatgttgtgtagcTGTTCTCTGTGGGGCTGTGTGCCATATCaacaacaataacacacacaggcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaatcgtgAAGTGAAACTGATAAATGTCAAGTGAATAGCTGTGTTAATAGTGTTGTGCCCTGCCGTGTGAATTGTGCAGCTACCAGTGTGTAGTGCTGCAGGGCGATTTGGTAGACACCATGTTGTTGTCTGTAATAATGTGGAATAAATACCGTCACTTCCTACCACTGTTACTCTGGAGCACAACATTAGAAGTGTTCCGGAACTTTAACCAAACCCAGCGTGGAACATTCCGCTGTCAGTCAACATTCCGTTGAGTGGCAGAATGAGGAATGAATGGACAGATATCTGGCTACTGTCATGCATATCATTTCACTCGGAGCTTTGGCACAGACGTTTAAAGGTATAGTGATGTTGAACGGTTGAATTTCACTCTGTAACCTTGTAGAGATTGTAGACTTTATTAGActaggacacacagagagagagagatgccaatGAGAACACCAGACTAGTATCCCTGGTTACCTCCCTAATGGCACCCAGACAGAGAGATGCCAATGAGAACACCAGACTAGTATCCCTGGTTACCTCCCTAATGGCACCCAGACAGAGGTAccctgtttctgtttgtttcagTGTCATAACATTAACTACGATGGCAGAAATAGGTCACACAGTTTCTAGACTTCACAGTTTAATCTGTAGATGCagtgtgagtcccaaatggaactctactccctatatagtgcactacttttaaaaaaatgtttttaccagggcccatagggctcccatagggctccgttcaaaactagtgcactatatagggaatagggttccatttggaaccaGACGTTATTAGGTCTGGCAGAACTAGCTGACAGAAACCAGTCAGTCCGGAGAAACCACCTCCCATGCAGATCTAAAATACagaactttaaaaaaatgtattgataaaTGTATTGATACATGTATTGATAAATGTATTGATACATGTATTGATAAATGTATTGATACATGTAATGATAAATGTATTGATACATGTAATGATAAATGTATTGATACATGTAATGATAAATGTATTGATAAATGTATAAATAGATGCATTGATACTTTATGTCAGTATTTGTTAAAGGAAGGCTAATAGCCTCTCCGTTTCATGATAAGTTATATTTTATTAATGTACTTCCTTGTTCACTGCTGTTTTCTCAGTGCTACATGTTAACTGATAAAGACGATGTTGACGTAGAGGTGTGGCTATTAGCCTACcttggatgcatcccaaatggcaccatgttccctatatagtgcactatagtgcactagtcagttaagaacaaattcttatttacaatgactgcctacaccggc
>TU1287959
AGGAAGGCTAATAGCCTCTCCGTTTCATGATAAGTTATATTTTATTAATGTACTTCCTTGTTCACTGCTGTTTTCTCAGTGCTACATGTTAACTGATAAAGACGATGTTGACGTAGAGGTGTGGCTATTAGCCTACcttggatgcatcccaaatggcaccatgttccctatatagtgcactatagtgcactagtcagttaagaacaaattcttatttacaatgactgcctacaccggccaaacccggattgtgcaccgccctatgggactcccaatcacagccggttgtgatacagcctggaatcgaaccaggtgtctgtagtgacgcctctagcactgtgacacagtgccttagaccgttgtgatacagcctggaatcgaaccagggtctgtagtgacgcctctagcactgtgacacagtgccttagaccgttgtgatacagcctggaatcgaaccagggtctgtagtgacgcctctagcactgtgaaccagtgccttagaccgttgtgatacagcctggaatcgaaccaggtgtctgtagtgatgcctctagcactgtgacacagtgcctcagaccgttgagatacagcctggaatcgaaccagtgtctgtagtgacgcctctagcactgtgacacagtgccttagaccgttgtgatacagcctggaatcgaaccagggtctgtagtgacacctctagcactgtgacacagtgccttagaccgttgcgccactcaggagggACTAGGGAAATGGACTAGGGTCCCACTAGGGACTAGGGTCCCACTAGGgtgcatagttactttaactctacctacatgtacatattacctcaattacctcaactaacctatgccctccacattgactctgtaccggaaccccctgtatattgcctccacattgactctgtaccggaaccccctgtatatagcctccacattgactctgtaccgtaacaccctgtatatagcctccacattgactctgtaccgtaataccc
>TU1287962
CGGAACTTTAACCAAACCCAGCGTGGAACATTCCGCTGTCAGTCAACATTCCGTTGAGTGGCAGAATGAGGAATGAATGGACAGATATCTGGCTACTGTCATGCATATCATTTCACTCGGAGCTTTGGCACAGACGTTTAAAGGTATAGTGATGTTGAACGGTTGAATTTCACTCTGTAACCTTGTAGAGATTGTAGACTTTATTAGActaggacacacagagagagagagatgccaatGAGAACACCAGACTAGTATCCCTGGTTACCTCCCTAATGGCACCCAGACAGAGAGATGCCAATGAGAACACCAGACTAGTATCCCTGGTTACCTCCCTAATGGCACCCAGACAGAGGTAccctgtttctgtttgtttcagTGTCATAACATTAACTACGATGGCAGAAATAGGTCACACAGTTTCTAGACTTCACAGTTTAATCTGTAGATGCagtgtgagtcccaaatggaactctactccctatatagtgca

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939419.1 False 3495 mRNA 0.48 8 97865654 97878576
TU1287959 False 1003 lncRNA 0.49 2 97864865 97865891
TU1287962 True 493 lncRNA 0.44 1 97866275 97866767

Neighbor

gene id symbol gene type direction distance location
LOC110538882 LOC106601977 coding downstream 78430 97764189 ~ 97787224 (-)
LOC110538885 LOC106602057 coding downstream 124683 97715738 ~ 97740971 (-)
LOC110539076 LOC106606268 coding downstream 150399 97620303 ~ 97715255 (-)
LOC110538805 LOC106592410 coding downstream 299201 97527207 ~ 97574077 (-)
LOC110538797 abcc1 coding downstream 356471 97450528 ~ 97509183 (-)
LOC110487090 LOC106606200 coding upstream 39161 97917737 ~ 97943871 (-)
LOC110487083 tigd1 coding upstream 68702 97947278 ~ 97949231 (-)
LOC110485313 LOC106535622 coding upstream 81177 97959753 ~ 97974748 (-)
LOC110518411 LOC106606198 coding upstream 101195 97979771 ~ 98001593 (-)
LOC110485327 LOC105012792 coding upstream 258498 98137074 ~ 98186289 (-)
G1131671 NA non-coding downstream 1327 97863729 ~ 97864327 (-)
G1131724 NA non-coding downstream 8919 97856529 ~ 97856735 (-)
G1131723 NA non-coding downstream 9750 97855448 ~ 97855904 (-)
G1131722 NA non-coding downstream 10850 97854552 ~ 97854804 (-)
G1131721 NA non-coding downstream 11858 97853597 ~ 97853796 (-)
G1131729 dus1l non-coding upstream 17011 97895587 ~ 97895824 (-)
G1131731 NA non-coding upstream 19095 97897671 ~ 97897963 (-)
G1131679 NA non-coding upstream 21211 97899787 ~ 97900341 (-)
G1131733 NA non-coding upstream 22391 97900967 ~ 97901198 (-)
G1131734 NA non-coding upstream 25663 97904239 ~ 97904496 (-)
G1131666 NA other downstream 5136 97857599 ~ 97860518 (-)
G1131720 NA other downstream 12061 97852786 ~ 97853593 (-)
G1131656 NA other downstream 152538 97712634 ~ 97713116 (-)
LOC118936513 cog1 other upstream 380306 98230363 ~ 98259687 (-)
G1131863 NA other upstream 504394 98382970 ~ 98383815 (-)
G1132328 NA other upstream 1128051 99006627 ~ 99010112 (-)
LOC118937838 LOC106606233 other upstream 1174928 99052890 ~ 99059256 (-)

Expression


Co-expression Network