LOC110487090 (LOC106606200)


Basic Information

Item Value
gene id LOC110487090
gene name LOC106606200
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97917737 ~ 97943871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939423.1
TTGTTCCAGCTAGCCATATTTTGATTTTAGGCAGTGACTTTTGCTCCACAGGGATTTGGATACAAGTTGCACTCCCATACCCCGGATGTGATTATTGTGTTTGTGTCGGCAGAGAAGGAGATGCCTCTGCCCGTACAGGTCTTTAACTTTCAGggggCTGTTGAGCCGATGCAGATCGATGCTGACCCCCAGGAAGACCAGCAGAATGCTCCAGACACCAACTATGTGGTGGAAAACCCCACACTGGACCTGGAGCAGTTTGCCTCCAGCTACAGCGGTCTGATGCGTATTGAGAGACTGCAGTTCATAGCACAACATTGTCCCCAGCTCCGTGCCGAGGCCCTGAAGATGGCCCTGTCCTTCGTCCAGAGGACCTTCAACGTAGACGTGTACGAGGAGATCCACCGCAGACTCACCGACGCCAAGCGACAGGCGCAGGGTGTCCCTGACGCGGTGCCTGATGGGCCGGCGGAGGCCCCTCTCCTGGACACAGCCTGGGCAGAGAACACCAGGAAAAAGGCCCTTCTCAAACTGGAGAAGCTGGACACTGACCTCAAGAACTACAAGGGAAACTCCATCAAAGAGAGCATCAGgCGGGGTCATGATGACCTTGGGGACCACTATTTAGACTGTGGAGATCTCAGCAACGCCCTGAAGTGTTACAGCCGAGCCCGAGACTACTGCACTAGTGCCAAGCATGTCATCAACATGTGTCTGAACGTCATCAAGGTTAGCGTTTACCTCCAGAACTGGTCCCATGTGCTTAGCTACGTCAGCAAGGCAGAATCCACTCCAGAGATAGCTGAGcaacgaggagagagagacagtcagaaccAATCTGTCCTCACCAAATTAAAATGTGCTGCGGGTTTGGCAGAGCTGGCCTCTAGAAAGTACAAACCGGCCGCTAAGTGCTTCCTCCAGGCTTCATTTGACCACTGCGACTTCCCAGAGCTTCTGTCCCCCAGTAATGTAGCGGTGTATGGAGGGATGTGTGCCCTGGCCACCTTCGACAGACAGGAACTACAGAAGAACATCATCTCAAGCAGctCCTTTAAGTTGTTTTTAGAGTTGGAGCCCCAGGTGCGTGACATAATCTTCAAGTTTTACGAATCAAAGTACGCATCCTGTCTGAAACTACTGGATGAGATGAAGGATAACCTTCTATTGGACCTGTACCTGGCCCCCCACGTTAGAACACTGTACACACAGATCAGAAACAGAGCCCTTATACAGtacttCAGCCCGTATGTGTCTGCAGACATGACTAAGATGTCCCAGTCCTTCAACACCACAGTGTTATCTCTGGAGGATGAACTGACCCAGCTCATACTGGAGGGACTGATCAACGCACGTATAGACTCTCacagcaagATCCTGTATGCGAGGGACGTGGACCAGAGGGGCCACACATTTGAGAAGTCTGTCCACATGGGCAAGGAGTTCCAGAGACGAGCCAAAGCCACGATCCTCAGAGCTGCTGTGCTGCGCAACCAGATACACGTCAAGtccCCTCCTAGAGAAGGCAACCTAGGGGAGCTATCAACAGCCAACAGCCAAACAACCAGGATGAGCAGCACCATGTGACAGGGACGTCCCGTCATGACACCATCGCTGGCTGTGTCTGACACTCtgctccctatgtagtgcactaccctatggggccctggtcaaaagtagtgggcCATTTGGTACACAGACGATGCCTGGTGCCTCTGAATGAACAGAGGGAGTGTGGGGTGCCTGTCCACAACAGGCCTCAAGTAGTGCCCTTCTTTTGGCCAAGTCAAAGCTACAACTCCTAAGCTGGAGTCTGGCCAACAGTGGGGAACATGGTGTCATTTGAGAAGCAGCCTATGACATGGCCCCAACGTTAGCAAAAAAACCACCTGCGTCCCCTCAAAc
>XM_036939424.1
TTTGTTCCAGCTAGCCATATTTTGATTTTAGGCAGTGACTTTTGCTCCACAGGGATTTGGATACAAGTTGCACTCCCATACCCCGGATGTGATTATTGTGTTTGTGTCGGCAGAGAAGGAGATGCCTCTGCCCGTACAGGTCTTTAACTTTCAGggggCTGTTGAGCCGATGCAGATCGATGCTGACCCCCAGGAAGACCAGCAGAATGCTCCAGACACCAACTATGTGGTGGAAAACCCCACACTGGACCTGGAGCAGTTTGCCTCCAGCTACAGCGGTCTGATGCGTATTGAGAGACTGCAGTTCATAGCACAACATTGTCCCCAGCTCCGTGCCGAGGCCCTGAAGATGGCCCTGTCCTTCGTCCAGAGGACCTTCAACGTAGACGTGTACGAGGAGATCCACCGCAGACTCACCGACGCCAAGCGACAGGCGCAGGGTGTCCCTGACGCGGTGCCTGATGGGCCGGCGGAGGCCCCTCTCCTGGACACAGCCTGGGCAGAGAACACCAGGAAAAAGGCCCTTCTCAAACTGGAGAAGCTGGACACTGACCTCAAGAACTACAAGGGAAACTCCATCAAAGAGAGCATCAGgCGGGGTCATGATGACCTTGGGGACCACTATTTAGACTGTGGAGATCTCAGCAACGCCCTGAAGTGTTACAGCCGAGCCCGAGACTACTGCACTAGTGCCAAGCATGTCATCAACATGTGTCTGAACGTCATCAAGGTTAGCGTTTACCTCCAGAACTGGTCCCATGTGCTTAGCTACGTCAGCAAGGCAGAATCCACTCCAGAGATAGCTGAGcaacgaggagagagagacagtcagaaccAATCTGTCCTCACCAAATTAAAATGTGCTGCGGGTTTGGCAGAGCTGGCCTCTAGAAAGTACAAACCGGCCGCTAAGTGCTTCCTCCAGGCTTCATTTGACCACTGCGACTTCCCAGAGCTTCTGTCCCCCAGTAATGTAGCGGTGTATGGAGGGATGTGTGCCCTGGCCACCTTCGACAGACAGGAACTACAGAAGAACATCATCTCAAGCAGctCCTTTAAGTTGTTTTTAGAGTTGGAGCCCCAGGTGCGTGACATAATCTTCAAGTTTTACGAATCAAAGTACGCATCCTGTCTGAAACTACTGGATGAGATGAAGtacttCAGCCCGTATGTGTCTGCAGACATGACTAAGATGTCCCAGTCCTTCAACACCACAGTGTTATCTCTGGAGGATGAACTGACCCAGCTCATACTGGAGGGACTGATCAACGCACGTATAGACTCTCacagcaagATCCTGTATGCGAGGGACGTGGACCAGAGGGGCCACACATTTGAGAAGTCTGTCCACATGGGCAAGGAGTTCCAGAGACGAGCCAAAGCCACGATCCTCAGAGCTGCTGTGCTGCGCAACCAGATACACGTCAAGtccCCTCCTAGAGAAGGCAACCTAGGGGAGCTATCAACAGCCAACAGCCAAACAACCAGGATGAGCAGCACCATGTGACAGGGACGTCCCGTCATGACACCATCGCTGGCTGTGTCTGACACTCtgctccctatgtagtgcactaccctatggggccctggtcaaaagtagtgggcCATTTGGTACACAGACGATGCCTGGTGCCTCTGAATGAACAGAGGGAGTGTGGGGTGCCTGTCCACAACAGGCCTCAAGTAGTGCCCTTCTTTTGGCCAAGTCAAAGCTACAACTCCTAAGCTGGAGTCTGGCCAACAGTGGGGAACATGGTGTCATTTGAGAAGCAGCCTATGACATGGCCCCAACGTTAGCAAAAAAACCACCTGCGTCCCCTCAAAc

Function

NR:

description
PREDICTED: COP9 signalosome complex subunit 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939423.1 False 1905 mRNA 0.53 14 97917737 97943870
XM_036939424.1 True 1825 mRNA 0.53 13 97917737 97943871

Neighbor

gene id symbol gene type direction distance location
LOC110487093 LOC105031326 coding downstream 39161 97864865 ~ 97878576 (-)
LOC110538882 LOC106601977 coding downstream 130513 97764189 ~ 97787224 (-)
LOC110538885 LOC106602057 coding downstream 176766 97715738 ~ 97740971 (-)
LOC110539076 LOC106606268 coding downstream 202482 97620303 ~ 97715255 (-)
LOC110538805 LOC106592410 coding downstream 351284 97527207 ~ 97574077 (-)
LOC110487083 tigd1 coding upstream 3407 97947278 ~ 97949231 (-)
LOC110485313 LOC106535622 coding upstream 15882 97959753 ~ 97974748 (-)
LOC110518411 LOC106606198 coding upstream 35900 97979771 ~ 98001593 (-)
LOC110485327 LOC105012792 coding upstream 193203 98137074 ~ 98186289 (-)
LOC118936513 cog1 coding upstream 286492 98230363 ~ 98259687 (-)
G1131735 NA non-coding downstream 8211 97908811 ~ 97909526 (-)
G1131734 NA non-coding downstream 13241 97904239 ~ 97904496 (-)
G1131733 NA non-coding downstream 16539 97900967 ~ 97901198 (-)
G1131679 NA non-coding downstream 17396 97899787 ~ 97900341 (-)
G1131731 NA non-coding downstream 19774 97897671 ~ 97897963 (-)
G1131742 NA non-coding upstream 1442 97945313 ~ 97945610 (-)
G1131664 NA non-coding upstream 6119 97949990 ~ 97950740 (-)
G1131681 NA non-coding upstream 15303 97959174 ~ 97959506 (-)
G1131750 NA non-coding upstream 24553 97968424 ~ 97969031 (-)
G1131658 NA non-coding upstream 31137 97975008 ~ 97975811 (-)
G1131666 NA other downstream 57219 97857599 ~ 97860518 (-)
G1131720 NA other downstream 64144 97852786 ~ 97853593 (-)
G1131656 NA other downstream 204621 97712634 ~ 97713116 (-)
G1131863 NA other upstream 439099 98382970 ~ 98383815 (-)
G1132328 NA other upstream 1062756 99006627 ~ 99010112 (-)
LOC118937838 LOC106606233 other upstream 1109633 99052890 ~ 99059256 (-)

Expression


Co-expression Network