LOC110487083 (tigd1)


Basic Information

Item Value
gene id LOC110487083
gene name tigd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97947278 ~ 97949231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559005.2
TGACTTGAGCAACTTTTTTCAAACTATTTTCGCGGCGCACCGTTTTGTATAATCGGGAGAACGTTAGATGATCTATGTTTAGCCTAAGGAAGGCGAAGGAAATAATGTCACTAAATGGAAGTAGAAATGAAAGAGGACATGGAAAGAAAGGGACCGCAAAAAGGAGACAATATTCCAGGGAGGCACTAGAGACAGCTGTAGAGAAAGTAAAAGCTGGAATGAGCCTTAGAGAAGCTTCCCGTGAGTCAGGGATTCCTCACACCACTCTCCAAGATCACAAAAAGAACAAATATGCCTTTGCCCCTCACCCCAACCTGGCAATAACCACAGAGGAAGAGCACTCCTTAATATCGTATGTCCTCTGGATGGCCGACCATGCGTTCCCTATCAGCAGGACTGTGGTGAAGGCTCTGGCTGTGACCATTATCAAGGAGAGTGGTCGTAGCACCGTCGTCAATCTGGAAAGGGGACTGAGTGACAACTGGTGGTCTAGATTCAGGGCTCGCCACCCTGAGCTGAGCGCCAGGGTGCCCGACCCGCTCCACCGGGCCAGGGTACAGGGAGCTACTCCTGCCGCCATCAAGGGCTTCTTTGATGTCTACGAGCCTATCTTCGTCAGCCACGGCTTAGAACACAAGCCGCACCTCATCTTCAACTGCGACGAGATGGGGTTTTCGGACGAGCTCAAGTCCGGGGAGAAGGTTCTCTGTGGAAAAGGCAGGAAACACATCtatcaacagcagcagcagcacaccACTAGGGAACATATTACCGTGCGCTGCTGTGTGAGTGCAGCTGGTGAGAGTATCCCGCCCTTTATAATCTTCCACAAACGCCTCCCCAGTACGGCCTATGCCCTCGAGGGTCCACCGAAGGCCCTGTATGGTGCGTCCCCTAAAGGCTACGTGGACGCCGAACTTTTCCTGAAGTGGCTGCTCTTCTTCGTGAAGCACGCCCCAAAGGAGAGGCCCCTGGTGCTCGTAGTGGACCACCATAAAACTCATCTGTCCAGGGAGGTGGTCAAGTTCTGCCGGGAAAATCAGGTGGAGGTGGTCTGTCTGCCGGCGAATACCCACGTGTTGCGGCCATTGGAAATCAGCGTCTTTGGCCCGCTGAAGACTGTGTTCGGCAGGAATGCTGCACGTCTAGGTCTGGTGCGGGGCGATCTTGTCATCGGCAAGAAGCACTTCTCCGCCATGCTGCGAGAGGCCTATCCCCAGGCGGTCACTAAGAAAAACATTATGGCTGGGTTCAAGAAGGCAGGGATTTTCCCCCTCAACAGAGAGGCCTTTGACTCCTGCCAGCTGGTGAAGCTGGAGCCGACCACCCCGGACCCCAACGCAGCAACCTCAGAAGCCACTGCAGGAACCCCCGACTCCAAAGCAGCAGAGACCCCCGCAACCCCAGCAACGACCACATTTCTTGTCCCGGGTGGCTGCTGTTCGACCTGCGGGCAGCGTGCCCCACCCACAAACCCTTTGGTGGCCGCAGGACTCGTCTCTCCAGACCCGGCCAATGTCCTGGTGCCCCCAGTCTTCCAAACATCTAACCGGCAGAAAGTGAAGCGTCGACTCGTCCTGCCGGAGGAGTACAACAAACTCCTTCATCAACAGGAggctggagagaaggagaagcaggagaggaagaggaagagggaggagctgcagaggatgagagagaagagagagtccgGCAGAAACAACAAAGTGAAAAGGAAATGGCAGGCTGAGGTATCAGAGCTTGACGGAGATGTGTCAGAGCACTGTGCACCAGTGTCAGAGGACGATGTCTGTTTGCAGCCCCAATTACCTTGGGTTTTCAGTTTTCCATCTTTTGATAGTTTGCTCTAATTATATGAGagatgatgggagagagaga

Function

symbol description
tigd1 Predicted to enable DNA binding activity. Predicted to be active in nucleus.

NR:

description
uncharacterized protein LOC110487083

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559005.2 True 1878 mRNA 0.54 2 97947278 97949231

Neighbor

gene id symbol gene type direction distance location
LOC110487090 LOC106606200 coding downstream 3407 97917737 ~ 97943871 (-)
LOC110487093 LOC105031326 coding downstream 68702 97864865 ~ 97878576 (-)
LOC110538882 LOC106601977 coding downstream 160054 97764189 ~ 97787224 (-)
LOC110538885 LOC106602057 coding downstream 206307 97715738 ~ 97740971 (-)
LOC110539076 LOC106606268 coding downstream 232023 97620303 ~ 97715255 (-)
LOC110485313 LOC106535622 coding upstream 10522 97959753 ~ 97974748 (-)
LOC110518411 LOC106606198 coding upstream 30540 97979771 ~ 98001593 (-)
LOC110485327 LOC105012792 coding upstream 187843 98137074 ~ 98186289 (-)
LOC118936513 cog1 coding upstream 281132 98230363 ~ 98259687 (-)
LOC110487128 rogdi coding upstream 316824 98265920 ~ 98283153 (-)
G1131742 NA non-coding downstream 1668 97945313 ~ 97945610 (-)
G1131737 NA non-coding downstream 10406 97936543 ~ 97936872 (-)
G1131735 NA non-coding downstream 37752 97908811 ~ 97909526 (-)
G1131734 NA non-coding downstream 42782 97904239 ~ 97904496 (-)
G1131733 NA non-coding downstream 46080 97900967 ~ 97901198 (-)
G1131664 NA non-coding upstream 759 97949990 ~ 97950740 (-)
G1131681 NA non-coding upstream 9943 97959174 ~ 97959506 (-)
G1131750 NA non-coding upstream 19193 97968424 ~ 97969031 (-)
G1131658 NA non-coding upstream 25777 97975008 ~ 97975811 (-)
G1131680 NA non-coding upstream 27656 97976887 ~ 98048479 (-)
G1131666 NA other downstream 86760 97857599 ~ 97860518 (-)
G1131720 NA other downstream 93685 97852786 ~ 97853593 (-)
G1131656 NA other downstream 234162 97712634 ~ 97713116 (-)
LOC110538805 LOC106592410 other downstream 381090 97527207 ~ 97574077 (-)
G1131863 NA other upstream 433739 98382970 ~ 98383815 (-)
G1132328 NA other upstream 1057396 99006627 ~ 99010112 (-)
LOC118937838 LOC106606233 other upstream 1104273 99052890 ~ 99059256 (-)

Expression


Co-expression Network