LOC110485313 (LOC106535622)


Basic Information

Item Value
gene id LOC110485313
gene name LOC106535622
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97959753 ~ 97974748 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939425.1
AGGTTCCGCCGGGATTCGACACTGCCTCCCTCCGCTACTGCAGCCTGGTCGCGAGGAGCTGTACCAATTCACTTATTATTAGCGATATCAGAAACTATAAACAATTTGCCATTTTAAAACCAGGGAATAGTCCGTCGTTGGATACCACCACCCTCTGCGAAATGCAGGCCATCAAATGCGTCGTGGTGGGCGATGGAGCGGTGGGAAAGACATGTCTTCTCATCAGCTATACCACCAATGCCTTCCCTGGAGAATACATCCCCACAGTGTTTGACAACTACTCTGCCAATGTGATGGTAGATGGGAAACCAGTGAATCTGGGACTGTGGGATACTGCAGGACAGGAGGACTACGACAGGCTCAGACCACTGTCCTATCCACAGACgGACGTGTTCCTGACATGCTTCTCTCTGGTGAGCCCTGCCTCCTTTGAGAACGTCAGAGCTAAGTGGTACCCGGAAGTGCGTCACCACTGCCCCAACACCCCCATCATCCTGGTGGGCACGAAGCTGGACCTGAGGGACGACAAGGACACTATTGAGAGGCTGAGGGACAAGAAGTTGTCCCCAATCACCTACCCTCAGGGCCTGGCCATGGCACGGGAGATAGGTGCGGTGAAGTACCTGGAGTGCTCAGCCCTGACCCAGAGGGGGCTGAAGACGGTTTTCGACGAGGCCATCCGGGCCGTCCTGTGCCCGCCACCAATCAAAAAGAGGCGCAAGAAGTGCACCCTCTTCTGAGGGGGGGGGCGAGAAGGAGTGCACCCTC
>TU1287948
CCTCCGCTACTGCAGCCTGGTCGCGAGGAGCTGTACCAATTCACTTATTATTAGCGATATCAGAAACTATAAACAATTTGCCATTTTAAAACCAGGGAATAGTCCGTCGTTGGATACCACCACCCTCTGCGAAATGCAGGCCATCAAATGCGTCGTGGTGGGCGATGGAGCGGTGGGAAAGACATGTCTTCTCATCAGCTATACCACCAATGCCTTCCCTGGAGAATACATCCCCACAGTGTTTGACAACTACTCTGCCAATGTGATGGTAGATGGGAAACCAGTGAATCTGGGACTGTGGGATACTGCAGGACAGGAGGACTACGACAGGCTCAGACCACTGTCCTATCCACAGACgGACGTGTTCCTGACATGCTTCTCTCTGGTGAGCCCTGCCTCCTTTGAGAACGTCAGAGCTAAGTGGTACCCGGAAGTGCGTCACCACTGCCCCAACACCCCCATCATCCTGGTGGGCACGAAGCTGGACCTGAGGGACGACAAGGACACTATTGAGAGGCTGAGGGACAAGAAGTTGTCCCCAATCACCTACCCTCAGGGCCTGGCCATGGCACGGGAGATAGGTGCGGTGAAGTACCTGGAGTGCTCAGCCCTGACCCAGAGGGGGCTGAAGACGGTTTTCGACGAGGCCATCCGGGCCGTCCTGTGCCCGCCACCAATCAAAAAGAGGCGCAAGAAGTGCA

Function

NR:

description
hypothetical protein cypCar_00005910

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939425.1 False 768 mRNA 0.56 6 97959753 97974748
TU1287948 True 701 TUCP 0.55 6 97959792 97974720

Neighbor

gene id symbol gene type direction distance location
LOC110487083 tigd1 coding downstream 10522 97947278 ~ 97949231 (-)
LOC110487090 LOC106606200 coding downstream 15882 97917737 ~ 97943871 (-)
LOC110487093 LOC105031326 coding downstream 81177 97864865 ~ 97878576 (-)
LOC110538882 LOC106601977 coding downstream 172529 97764189 ~ 97787224 (-)
LOC110538885 LOC106602057 coding downstream 218782 97715738 ~ 97740971 (-)
LOC110518411 LOC106606198 coding upstream 5023 97979771 ~ 98001593 (-)
LOC110485327 LOC105012792 coding upstream 162326 98137074 ~ 98186289 (-)
LOC118936513 cog1 coding upstream 255615 98230363 ~ 98259687 (-)
LOC110487128 rogdi coding upstream 291307 98265920 ~ 98283153 (-)
LOC110517726 glyr1 coding upstream 308714 98283462 ~ 98316905 (-)
G1131681 NA non-coding downstream 247 97959174 ~ 97959506 (-)
G1131664 NA non-coding downstream 9013 97949990 ~ 97950740 (-)
G1131742 NA non-coding downstream 14143 97945313 ~ 97945610 (-)
G1131737 NA non-coding downstream 22881 97936543 ~ 97936872 (-)
G1131735 NA non-coding downstream 50227 97908811 ~ 97909526 (-)
G1131658 NA non-coding upstream 260 97975008 ~ 97975811 (-)
G1131680 NA non-coding upstream 2139 97976887 ~ 98048479 (-)
G1131753 NA non-coding upstream 12230 97986978 ~ 97990347 (-)
G1131754 NA non-coding upstream 14308 97989056 ~ 97990474 (-)
G1131755 NA non-coding upstream 20484 97995232 ~ 97995716 (-)
G1131666 NA other downstream 99235 97857599 ~ 97860518 (-)
G1131720 NA other downstream 106160 97852786 ~ 97853593 (-)
G1131656 NA other downstream 246637 97712634 ~ 97713116 (-)
LOC110538805 LOC106592410 other downstream 393565 97527207 ~ 97574077 (-)
G1131863 NA other upstream 408222 98382970 ~ 98383815 (-)
G1132328 NA other upstream 1031879 99006627 ~ 99010112 (-)
LOC118937838 LOC106606233 other upstream 1078756 99052890 ~ 99059256 (-)
LOC110538840 LOC106601903 other upstream 1116968 99090621 ~ 99092245 (-)

Expression


Co-expression Network