LOC118937811 (LOC106606197)


Basic Information

Item Value
gene id LOC118937811
gene name LOC106606197
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98003597 ~ 98017170 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939433.1
GTTATCTTCATCCTCCACCAACCTTTGTCCCAGGTGCATGCGCAGTAGCTGAATACGCAGACACACCCTcgtctcccctccttctctctctgtgtgtctctcaatCTCGCTCTACTTCCTCTTCTTGTGTCCTCTCCAGTCCTGCGCTGCACTGCTTCATTCGTGTCGACTGCCCAGAGTCCGCGAATACAACCCTgctacaaccacacacacagagacgttgGTTTACATCATCTTATCGTTCCTGTCcactggaggaaggagagAAGACATTCCGTTCCCAGCCACATTCCAGAACCCTGTGGACCCCTTGTTGAAGCATGTCTCTGTACAGCTTTGGGTTGGAGCCTCTCTCCTGTCATGCCTGGAATAAGGACAGGACACAGATTGCTGTCAGCCCCAACAGCAGTGTGGTGATCATCTATGAGAAGAAGGGGAACGAGTGGGCCAAGATCCACGAGCTGACTGAGCACAGTGGACGAATCACAGGCATCGACTGGGCTCCGGATTCGAACCGCATCGTGACGTGTGCATCGGACCGTAATGCGTACGTGTGGACCCTGAAGGACAAGGTGTGGAAGCCCACTCTGGTGTTGGTGAGGATCAACCGGGCTGCTACTTTCGTCAAGTGGTCCCCTCTGGAGAATAAGTTTGCCCTGGGCAGTGGAGCTCGCCTCATCTCTGTCTGCTACTTCGAGAAGGAGAACGACTGGTGGCTCAGTAAGCACATAAAGAAGAGCATCCGGTCCACGGTGATGTGTCTGGACTGGCACCCCAACAACATCCTGTTGGCTGCAGGATCCTCTGACTTCCACTGCAGGATCTTCTCTGCCTACATCAAGGAAATCGAGGACAAGCCAGGCCCGACAGCTTGGGGGGCTAAGATGCCATTTGGGGAGATGCTGCTGGAGACCAAGGACTGTGGAGGTTGGGTACACAGTGTCTCCTTCTCCCCCAGCGGAGACCACCTGGCCTGGGTCGCTCACAACAGCAGCATCAGTGTGGCCGACGCCACCCAGGGgaaagaGATGACTCAGCTGACAACGGACCGCCTCCCTCTAGTGAGCGTGCTCTATGTGAGCCCCACAGAGATGGTTGCCGCGGGCCATGACTGCTGTCCGTTTCAGTTCTCCTATAAGGGCCCAGGCAGTCTGAAGTTTGTTAAGAAGCTGGACATCCCCAAGCAGACCTCTAGGGGCAGCATGTCCGCCATGCAACACTTCCGCAATCTGGATAAGAAGGCTACTGACGACGAGAGCAACGAGCTGGGCTGCCTGCACCAGAACAGCATCacTCAGCTGTGTATCGTGTCAGGAACTAAGGCCCACGTGGACAAGTACAGCAGTGTGGGTCTGGACGGAGCTATGGTCCTCTGGGACTTCAAGCACTGAGTTCATGGAGGATGCTAGAGCCATAGGCTGTGTCTTGCCATCTGTGCGGTCAGCATTACTCCAGATGACCATGGGACTCACCACTACCAGTTGTTATTAACATCTACATTAAGCAGTTAGTcacaccagggttggggtcaattccatttcaattccagtcaattcggaaagtaaaccaaattccaattccattttttttaaattcctcattgaaaagcattgactggaattgactggaattgaaatggaattgaccccaacacaCAGTCACACCACTGTCAAGTGACCTATTATTTTACACAGATAGATGTGTCATCATGTGTATTCATTTTCAACTGGAACAGTAGACACTTCTGCAGCTTCAAGATGTTTTGCAATAAATCATGTTGCTTTGCGCTGGGATTCAATCAATGAATCAATATTTTTGAGTAAAATAAACATGCTTTCTACAGA
>XM_036939431.1
ctgtgtgtctctcaatCTCGCTCTACTTCCTCTTCTTGTGTCCTCTCCAGTCCTGCGCTGCACTGCTTCATTCGTGTCGACTGCCCAGAGTCCGCGAATACAACCCTgctacaaccacacacacagagacgttgGTTTACATCATCTTATCGTTCCTGTCcactggaggaaggagagTAGAGTTCCAACCAATCCCTGACAAGAAGAAGACATTCCGTTCCCAGCCACATTCCAGAACCCTGTGGACCCCTTGTTGAAGCATGTCTCTGTACAGCTTTGGGTTGGAGCCTCTCTCCTGTCATGCCTGGAATAAGGACAGGACACAGATTGCTGTCAGCCCCAACAGCAGTGTGGTGATCATCTATGAGAAGAAGGGGAACGAGTGGGCCAAGATCCACGAGCTGACTGAGCACAGTGGACGAATCACAGGCATCGACTGGGCTCCGGATTCGAACCGCATCGTGACGTGTGCATCGGACCGTAATGCGTACGTGTGGACCCTGAAGGACAAGGTGTGGAAGCCCACTCTGGTGTTGGTGAGGATCAACCGGGCTGCTACTTTCGTCAAGTGGTCCCCTCTGGAGAATAAGTTTGCCCTGGGCAGTGGAGCTCGCCTCATCTCTGTCTGCTACTTCGAGAAGGAGAACGACTGGTGGCTCAGTAAGCACATAAAGAAGAGCATCCGGTCCACGGTGATGTGTCTGGACTGGCACCCCAACAACATCCTGTTGGCTGCAGGATCCTCTGACTTCCACTGCAGGATCTTCTCTGCCTACATCAAGGAAATCGAGGACAAGCCAGGCCCGACAGCTTGGGGGGCTAAGATGCCATTTGGGGAGATGCTGCTGGAGACCAAGGACTGTGGAGGTTGGGTACACAGTGTCTCCTTCTCCCCCAGCGGAGACCACCTGGCCTGGGTCGCTCACAACAGCAGCATCAGTGTGGCCGACGCCACCCAGGGgaaagaGATGACTCAGCTGACAACGGACCGCCTCCCTCTAGTGAGCGTGCTCTATGTGAGCCCCACAGAGATGGTTGCCGCGGGCCATGACTGCTGTCCGTTTCAGTTCTCCTATAAGGGCCCAGGCAGTCTGAAGTTTGTTAAGAAGCTGGACATCCCCAAGCAGACCTCTAGGGGCAGCATGTCCGCCATGCAACACTTCCGCAATCTGGATAAGAAGGCTACTGACGACGAGAGCAACGAGCTGGGCTGCCTGCACCAGAACAGCATCacTCAGCTGTGTATCGTGTCAGGAACTAAGGCCCACGTGGACAAGTACAGCAGTGTGGGTCTGGACGGAGCTATGGTCCTCTGGGACTTCAAGCACTGAGTTCATGGAGGATGCTAGAGCCATAGGCTGTGTCTTGCCATCTGTGCGGTCAGCATTACTCCAGATGACCATGGGACTCACCACTACCAGTTGTTATTAACATCTACATTAAGCAGTTAGTcacaccagggttggggtcaattccatttcaattccagtcaattcggaaagtaaaccaaattccaattccattttttttaaattcctcattgaaaagcattgactggaattgactggaattgaaatggaattgaccccaacacaCAGTCACACCACTGTCAAGTGACCTATTATTTTACACAGATAGATGTGTCATCATGTGTATTCATTTTCAACTGGAACAGTAGACACTTCTGCAGCTTCAAGATGTTTTGCAATAAATCATGTTGCTTTGCGCTGGGATTCAATCAATGAATCAATATTTTTGAGTAAAATAAACATGCTTTCTACAGA
>XM_036939432.1
tcaatCTCGCTCTACTTCCTCTTCTTGTGTCCTCTCCAGTCCTGCGCTGCACTGCTTCATTCGTGTCGACTGCCCAGAGTCCGCGAATACAACCCTgctacaaccacacacacagagacgttgGTTTACATCATCTTATCGTTCCTGTCcactggaggaaggagagAGTTCCAACCAATCCCTGACAAGAAGAAGACATTCCGTTCCCAGCCACATTCCAGAACCCTGTGGACCCCTTGTTGAAGCATGTCTCTGTACAGCTTTGGGTTGGAGCCTCTCTCCTGTCATGCCTGGAATAAGGACAGGACACAGATTGCTGTCAGCCCCAACAGCAGTGTGGTGATCATCTATGAGAAGAAGGGGAACGAGTGGGCCAAGATCCACGAGCTGACTGAGCACAGTGGACGAATCACAGGCATCGACTGGGCTCCGGATTCGAACCGCATCGTGACGTGTGCATCGGACCGTAATGCGTACGTGTGGACCCTGAAGGACAAGGTGTGGAAGCCCACTCTGGTGTTGGTGAGGATCAACCGGGCTGCTACTTTCGTCAAGTGGTCCCCTCTGGAGAATAAGTTTGCCCTGGGCAGTGGAGCTCGCCTCATCTCTGTCTGCTACTTCGAGAAGGAGAACGACTGGTGGCTCAGTAAGCACATAAAGAAGAGCATCCGGTCCACGGTGATGTGTCTGGACTGGCACCCCAACAACATCCTGTTGGCTGCAGGATCCTCTGACTTCCACTGCAGGATCTTCTCTGCCTACATCAAGGAAATCGAGGACAAGCCAGGCCCGACAGCTTGGGGGGCTAAGATGCCATTTGGGGAGATGCTGCTGGAGACCAAGGACTGTGGAGGTTGGGTACACAGTGTCTCCTTCTCCCCCAGCGGAGACCACCTGGCCTGGGTCGCTCACAACAGCAGCATCAGTGTGGCCGACGCCACCCAGGGgaaagaGATGACTCAGCTGACAACGGACCGCCTCCCTCTAGTGAGCGTGCTCTATGTGAGCCCCACAGAGATGGTTGCCGCGGGCCATGACTGCTGTCCGTTTCAGTTCTCCTATAAGGGCCCAGGCAGTCTGAAGTTTGTTAAGAAGCTGGACATCCCCAAGCAGACCTCTAGGGGCAGCATGTCCGCCATGCAACACTTCCGCAATCTGGATAAGAAGGCTACTGACGACGAGAGCAACGAGCTGGGCTGCCTGCACCAGAACAGCATCacTCAGCTGTGTATCGTGTCAGGAACTAAGGCCCACGTGGACAAGTACAGCAGTGTGGGTCTGGACGGAGCTATGGTCCTCTGGGACTTCAAGCACTGAGTTCATGGAGGATGCTAGAGCCATAGGCTGTGTCTTGCCATCTGTGCGGTCAGCATTACTCCAGATGACCATGGGACTCACCACTACCAGTTGTTATTAACATCTACATTAAGCAGTTAGTcacaccagggttggggtcaattccatttcaattccagtcaattcggaaagtaaaccaaattccaattccattttttttaaattcctcattgaaaagcattgactggaattgactggaattgaaatggaattgaccccaacacaCAGTCACACCACTGTCAAGTGACCTATTATTTTACACAGATAGATGTGTCATCATGTGTATTCATTTTCAACTGGAACAGTAGACACTTCTGCAGCTTCAAGATGTTTTGCAATAAATCATGTTGCTTTGCGCTGGGATTCAATCAATGAATCAATATTTTTGAGTAAAATAAACATGCTTTCTACAGA

Function

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 1A-like

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939433.1 False 1844 mRNA 0.51 10 98003597 98017170
XM_036939431.1 False 1784 mRNA 0.51 10 98003686 98017170
XM_036939432.1 True 1770 mRNA 0.51 10 98003697 98017170

Neighbor

gene id symbol gene type direction distance location
LOC118937810 dus1l coding upstream 88115 97894374 ~ 97915482 (+)
LOC118937809 LOC105031325 coding upstream 143077 97792828 ~ 97860629 (+)
LOC118936512 LOC106602055 coding upstream 239579 97709710 ~ 97764938 (+)
trnat-cgu-4 NA coding upstream 422243 97581283 ~ 97581354 (+)
LOC110539053 LOC106601961 coding upstream 477225 97518340 ~ 97526372 (+)
LOC110487112 LOC106594630 coding downstream 5041 98022211 ~ 98059451 (+)
LOC110485325 LOC105012794 coding downstream 48494 98065664 ~ 98090718 (+)
LOC118937837 LOC106594247 coding downstream 84473 98101643 ~ 98122078 (+)
LOC110516721 LOC105012791 coding downstream 170562 98187732 ~ 98218285 (+)
LOC118936514 smim22 coding downstream 242400 98259570 ~ 98268855 (+)
G1131492 NA non-coding upstream 210 98002002 ~ 98003387 (+)
G1131489 NA non-coding upstream 4198 97998201 ~ 97999399 (+)
G1131483 NA non-coding upstream 11834 97986500 ~ 97991763 (+)
G1131484 NA non-coding upstream 14171 97987540 ~ 97989426 (+)
G1131473 NA non-coding upstream 58802 97944144 ~ 97944795 (+)
G1131497 NA non-coding downstream 3638 98020808 ~ 98021409 (+)
G1131510 NA non-coding downstream 73820 98090990 ~ 98124048 (+)
G1131518 NA non-coding downstream 116981 98134151 ~ 98134350 (+)
G1131438 NA other upstream 181540 97820724 ~ 97822057 (+)
G1130780 LOC106606334 other upstream 840518 97162262 ~ 97163079 (+)
LOC118937804 LOC106591169 other upstream 1301660 96676774 ~ 96702725 (+)
G1130570 alg1 other upstream 1370145 96618256 ~ 96633452 (+)
LOC110538761 LOC106606716 other upstream 2373022 95629494 ~ 95815227 (+)
G1132060 NA other downstream 707687 98724857 ~ 98725197 (+)
G1132058 NA other downstream 746789 98762440 ~ 98767257 (+)
G1132082 NA other downstream 764969 98782139 ~ 98783327 (+)
G1132093 NA other downstream 778588 98795758 ~ 98797512 (+)

Expression


Co-expression Network