LOC110485325 (LOC105012794)


Basic Information

Item Value
gene id LOC110485325
gene name LOC105012794
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98065664 ~ 98090718 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939565.1
AGAAAAAGGCTACAGCAGTATTTGCGCGCCCCCGCTTGAAGACCGGCTCGAGCCGGTGGGCTATAAAGAGCCGACGGAACAGTAAGGAAATAAGGAAACGGTTGATTTACTTTAACAGAAGACACAGATGTGTTTTAGGCATTCAAGAAAGAGAGGACAGATACAGTAACCAGGGTAACATAATAAGCTATGATTCTCCTTGTGGATCGGAcaagacatttttttttacatcatgcTTAAAACGAGGTTGCTTTAGTCCAGAACATCGATTCGTCTGATCGGAAGCGGAAGAGACAGAGCTGGTCGACTACCGTTATAGGGAGAACATAGAAATAACATACCGATAAACTAGCTGCTCATTTGACCATTAAAACCTGTTCGTTATATTCGACAGTCGACTATTCTGTGTCGATCACTTTTCCGACTAGACTGATCGTCGCTCTGTTGgTGCTCAGACCCAGCCATGCGGGGGTTAAAGTCAGCGGTGCGGGGGTCCGGGGGGTGCGGGGGTCCATGTGTGTACGAGGCGGTGCCAGacgggggctggggctgggcggTGGCCGTGGCCTTCTTCTTCGTTGAGGTGTTTACCTACGGGACCATCAAGTCTCTGGGGGTGTTCCTCGAGGACCTCATGACAGAGTTTGGGGAGAGCAACAGCAGAGTATCCTGGGTCATCGCAATCTGTGTCTTCATCCTCACATTCACAGcccCTCTGTCCTCGGTGCTCAGTAACCGGTTTGGGTACCGTCCCGTAGTGATGTTGGGGGGTTTTCTGGTCAGTCTGGGTACCATCAGCTCTGCTTTCGTCTCCTCCATCAACGAGATGTACGTCACTATCGGCATCGTCTCAGGTCTGGGGTACTGCCTGACCTTCCTGCCCACCATCACCATCCTGTCCCAGTACTTCAgcaggaggaggtccctggtcacCGCTCTGGCCTCCTCAGGGGAGTCCTTTGCCATGTTTGTCTTCGCACCAGcCTTCATGGCCTTGAAGGAGATCATCGGCTGGCGCCACTGCCTCATTGTCATCGGTCTCATGCAGGCCTCCGTGATTGGCTGCGGCGCTCTGCTTCGACCAATCATCATCCGACCTGACCAGGAAGTGTCAGGGGAGGTGTCCAATAAGGAGAAGCTGTCCGTTAAGCTGCAGACGGTCTACGAGCTGGAGAATGAGGACACCGAGACCAACGTTAGCTCGGGGGAGTCTGAGGACTCGGGGGATTCTGGGGTCACCTCTCTGTCCGCCTCCAGTGCTGACCTCCGGGCCTCCACAGCCGCACAGGACCCCTCAGAGACCCGGGCCCTCATGGAGGACCAGGGGGAGAAGAACCAGGGGGAGAAGAACCAGGGGGGACAGGCAGGCCTTGGAACCCCACTGAATCAGCTGGAGGCTGGGGAGAAAGAGCAGGGTGAGGTGGGTCCCCTTGTCCAACCCTCCAGACCTAAACTTCTAGACTTTTCTGTGTTGAAAGATGGAGCGTTcatctgctactctctgttcggTCTCTTCGCCACGCTGGGGTTCTTCGCCCCGTCGCTCTACATCATAGAGCTCAGTAAGAGCCGCGGCGTCCACCCAGAGAAGGCGGCCTACATGCTCTCTGTAATGGCGGTGTCCGAGGTCTGCGGGCGCCTGTCCATCGGGGTCATTTTAAACAAGGTGCGGATGCGTAAGACCCAGGTGCTTCTGGGATGTGTAGTTCTGCTGTGTCTGGTGCTGCTTGCCTTCACCCAGGTGACTGAGTTCTGGGGCCTGGCAGCCTGCTGCTGCCTCTATGGCTTCCTGATGGGCACCGTGGGCTCTACACACATCCCCATGCTGGCGGAGGACGACGTGGTGGGCATAGACAGGATGCCCTCGTCCGTGGGGGTCTATGTGTGTATCCAGAGCTTTGCTGGGTTGGCAGGACCACCACTGGGGGGCCTGTTGGTGGACAAGACCCAGAACTATGGCTCAGCCTTCTACTCCTGTGCTGTGGATGGCCTGGGCGCCATCTTCCTCGCCATGGTGGGGCCTGCCAAGTCTGGCCTCTGCCACCGCGGGAAGACGAGAAaacaggaggaggaaggaggagaggaggaggaggagaggaggaggagaaggtttCTCAGGACAGTGGATCAACAGATTATCTAG
>TU1287723
aggagaaggtttCTCAGGACAGTGGATCAACAGATTATCTAGATGTTGATCTGGTTGAGGAGACCAGTCCGGCTAAATGGACAAACACTCAACCATCTAGCAAATAAGAGAACACACACGCTGTCAACATGCTACTGAGAGACTGAGTGCTGGACAAACACCTCTGTGGTACagaatgtatacacacacacacacactgtcaacatGCTACTGAGAGACTGAGTGCTGGACAATCACCTCTGTGGTACagaatgtatacacacacacaaacacagctTTGACCTGTTCACCCTCTCAGATGTCATTCACATACACTTGCATTGCAGTGAA
>TU1287727
aggagaaggtttCTCAGGACAGTGGATCAACAGATTATCTAGATGTTGATCTGGTTGAGGAGACCAGTCCGGCTAAATGGACAAACACTCAACCATCTAGCAAATAAGAGAACACACACGCTGTCAACATGCTACTGAGAGACTGAGTGCTGGACAAACACCTCTGTGGTACagaatgtatacacacacacacacactgtcaacatGCTACTGAGAGACTGAGTGCTGGACAATCACCTCTGTGGTACagaatgtatacacacacacacacacacacagctTTGACCTGTTCACCCTCTCAGATGTCATTCACATACACTTGCATTGCAGTGAA

Function

NR:

description
PREDICTED: monocarboxylate transporter 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939565.1 False 2143 mRNA 0.56 7 98065664 98090373
TU1287723 False 330 lncRNA 0.45 2 98090332 98090718
TU1287727 True 334 lncRNA 0.45 2 98090332 98090718

Neighbor

gene id symbol gene type direction distance location
LOC110487112 LOC106594630 coding upstream 6213 98022211 ~ 98059451 (+)
LOC118937811 LOC106606197 coding upstream 48494 98003597 ~ 98017170 (+)
LOC118937810 dus1l coding upstream 150182 97894374 ~ 97915482 (+)
LOC118937809 LOC105031325 coding upstream 205144 97792828 ~ 97860629 (+)
LOC118936512 LOC106602055 coding upstream 301646 97709710 ~ 97764938 (+)
LOC118937837 LOC106594247 coding downstream 11270 98101643 ~ 98122078 (+)
LOC110516721 LOC105012791 coding downstream 97359 98187732 ~ 98218285 (+)
LOC118936514 smim22 coding downstream 169197 98259570 ~ 98268855 (+)
LOC110487124 LOC105006040 coding downstream 335387 98425760 ~ 98564239 (+)
LOC110516605 LOC106592968 coding downstream 885960 98976333 ~ 98977246 (+)
G1131497 NA non-coding upstream 44255 98020808 ~ 98021409 (+)
G1131492 NA non-coding upstream 62277 98002002 ~ 98003387 (+)
G1131489 NA non-coding upstream 66265 97998201 ~ 97999399 (+)
G1131483 NA non-coding upstream 73901 97986500 ~ 97991763 (+)
G1131510 NA non-coding downstream 617 98090990 ~ 98124048 (+)
G1131518 NA non-coding downstream 43778 98134151 ~ 98134350 (+)
G1131508 NA non-coding downstream 47550 98137923 ~ 98140321 (+)
G1131554 NA non-coding downstream 111444 98201817 ~ 98202540 (+)
G1131557 NA non-coding downstream 129380 98219753 ~ 98225599 (+)
G1131438 NA other upstream 243607 97820724 ~ 97822057 (+)
G1130780 LOC106606334 other upstream 902585 97162262 ~ 97163079 (+)
LOC118937804 LOC106591169 other upstream 1363727 96676774 ~ 96702725 (+)
G1130570 alg1 other upstream 1432212 96618256 ~ 96633452 (+)
LOC110538761 LOC106606716 other upstream 2435089 95629494 ~ 95815227 (+)
G1132060 NA other downstream 634484 98724857 ~ 98725197 (+)
G1132058 NA other downstream 673586 98762440 ~ 98767257 (+)
G1132082 NA other downstream 691766 98782139 ~ 98783327 (+)
G1132093 NA other downstream 705385 98795758 ~ 98797512 (+)

Expression


Co-expression Network