LOC118937837 (LOC106594247)


Basic Information

Item Value
gene id LOC118937837
gene name LOC106594247
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98101643 ~ 98122078 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939566.1
atgtgTCAGCGGTGCGGGGGTCCGGGGGGTGCGGGGGGTCCATGTGTGTACGAGGCGGTGCCAGacgggggctggggctgggcggTGGCCGTGGCCTTCTTCTTCGTTGAGGTGTTTACCTACGGGACCATCAAGTCTCTGGGGGTGTTCCTCGAGGACCTCATGACAGAGTTTGGGGAGAGCAACAGCAGAGTATCCTGGGTCATCGCAATCTGTGTCTTCATCCTCACATTCACAGcccCTCTGTCCTCGGTGCTCAGTAACCGGTTTGGGTACCGTCCCGTAGTGATGTTGGGGGGTTTTCTGGTCAGTCTGGGTACCATCAGCTCTGCTTTCGTCTCCTCCATCAACGAGATGTACGTCACTATCGGCATCGTCTCAGGTCTGGGGTACTGCCTGACCTTCCTGCCCACCATCACCATCCTGTCCCAGTACTTCAgcaggaggaggtccctggtcacCGCTCTGGCCTCCTCAGGGGAGTCCTTTGCCATGTTTGTCTTCGCACCAGcCTTCATGGCCTTGAAGGAGATCATCGGCTGGCGCCACTGCCTCATTGTCATCGGTCTCATGCAGGCCTCCGTGATTGGCTGCGGCGCTCTGCTTCGACCAATCATCATCCGACCTGACCAGGAAGTGTCAGGGGAGGTGTCCAATAAGGAGAAGCTGTCCGTTAAGCTGCAGACGGTCTACGAGCTGGAGAATGAGGACACCGAGACCAACGTTAGCTCGGGGGAGTCTGAGGACTCGGGGGATTCTGGGGTCACCTCTCTGTCCGCCTCCAGTGCTGACCTCCGGGCCTCCACAGCCGCACAGGACCCCTCAGAGACCCGGGCCCTCATGGAGGACCAGGGGGAGAAGAACCAGGGGGAGAAGAACCAGGGGGGACAGGCAGGCCTTGGAACCCCACTGAATCAGCTGGAGGCTGGGGAGAAAGAGCAGGGTGAGGTGGGTCCCCTTGTCCAACCCTCCAGACCTAAACTTCTAGACTTTTCTGTGTTGAAAGATGGAGCGTTcatctgctactctctgttcggTCTCTTCGCCACGCTGGGGTTCTTCGCCCCGTCGCTCTACATCATAGAGCTCAGTAAGAGCCGCGGCGTCCACCCAGAGAAGGCGGCCTACATGCTCTCTGTAATGGCGGTGTCCGAGGTCTGCGGGCGCCTGTCCATCGGGGTCATTTTAAACAAGGTGCGGATGCGTAAGACCCAGGTGCTTCTGGGATGTGTAGTTCTGCTGTGTCTGGTGCTGCTTGCCTTCACCCAGGTGACTGAGTTCTGGGGCCTGGCAGCCTGCTGCTGCCTCTATGGCTTCCTGATGGGCACCGTGGGCTCTACACACATCCCCATGCTGGCGGAGGACGACGTGGTGGGCATAGACAGGATGCCCTCGTCCGTGGGGGTCTATGTGTGTATCCAGAGCTTTGCTGGGTTGGCAGGACCACCACTGGGGGGCCTGTTGGTGGACAAGACCCAGAACTATGGCTCAGCCTTCTACTCCTGTGCTGTGGGAATGGGCCTGGGCGCCATCTTCCTCGCCATGGTGGGGCCTGCCAAGTCTGGCCTCTGCCACCGCGGGAAGACGAGAAaacaggaggaggaaggaggagaggagagaggaggagaggaggaggagaaggtttCTCAGGACAGTGGATCAACAGATTATCTAGATGTTGATCTGGTTGAGGAGACCAGTCCGGCTAAATGGACAAACACTCAACCATCTAGCAAATAAGAGAACACACACGCTGTCAACATGCTACTGAGAGACTGAGTGCTGGACAAACACCTCTGTGGTACagaatgtatacacacacacacacacactgtcaacatGCTACTGAGAGACTGAGTGCTGGACAATCACCTCTGTGGTACagaatgtatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacagctttGACCTGTTCACCCTCTCAGATGTCATTCACATACACTTGCATTGCAGTGAACAACTGTCTTAGGTGCATTCCTATTGACCAAGTTTCTCTCCTCAGAGTCAACCAAACTCCATGCATGGCTGAGACACAGGCTTTTAACATGATTACCACTCTGTCAGTAGTTGATATAACCATGATATGACCTCTgttcatagttataaccatgatatGACATCTCTCcatagttataaccatgatatGACCTCTCGGGTTAatagttataacca

Function

NR:

description
LOW QUALITY PROTEIN: monocarboxylate transporter 7-like, partial

GO: NA

KEGG:

id description
K08183 SLC16A6; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939566.1 True 2232 mRNA 0.55 6 98101643 98122078

Neighbor

gene id symbol gene type direction distance location
LOC110485325 LOC105012794 coding upstream 11270 98065664 ~ 98090718 (+)
LOC110487112 LOC106594630 coding upstream 42192 98022211 ~ 98059451 (+)
LOC118937811 LOC106606197 coding upstream 84473 98003597 ~ 98017170 (+)
LOC118937810 dus1l coding upstream 186161 97894374 ~ 97915482 (+)
LOC118937809 LOC105031325 coding upstream 241123 97792828 ~ 97860629 (+)
LOC110516721 LOC105012791 coding downstream 65654 98187732 ~ 98218285 (+)
LOC118936514 smim22 coding downstream 137492 98259570 ~ 98268855 (+)
LOC110487124 LOC105006040 coding downstream 303682 98425760 ~ 98564239 (+)
LOC110516605 LOC106592968 coding downstream 854255 98976333 ~ 98977246 (+)
LOC110539183 LOC106606365 coding downstream 948918 99070996 ~ 99088300 (+)
G1131497 NA non-coding upstream 80234 98020808 ~ 98021409 (+)
G1131492 NA non-coding upstream 98256 98002002 ~ 98003387 (+)
G1131489 NA non-coding upstream 102244 97998201 ~ 97999399 (+)
G1131518 NA non-coding downstream 12073 98134151 ~ 98134350 (+)
G1131508 NA non-coding downstream 15845 98137923 ~ 98140321 (+)
G1131554 NA non-coding downstream 79739 98201817 ~ 98202540 (+)
G1131557 NA non-coding downstream 97675 98219753 ~ 98225599 (+)
G1131560 NA non-coding downstream 108063 98230141 ~ 98231090 (+)
G1131438 NA other upstream 279586 97820724 ~ 97822057 (+)
G1130780 LOC106606334 other upstream 938564 97162262 ~ 97163079 (+)
LOC118937804 LOC106591169 other upstream 1399706 96676774 ~ 96702725 (+)
G1130570 alg1 other upstream 1468191 96618256 ~ 96633452 (+)
LOC110538761 LOC106606716 other upstream 2471068 95629494 ~ 95815227 (+)
G1132060 NA other downstream 602779 98724857 ~ 98725197 (+)
G1132058 NA other downstream 641881 98762440 ~ 98767257 (+)
G1132082 NA other downstream 660061 98782139 ~ 98783327 (+)
G1132093 NA other downstream 673680 98795758 ~ 98797512 (+)

Expression


Co-expression Network