LOC110485327 (LOC105012792)


Basic Information

Item Value
gene id LOC110485327
gene name LOC105012792
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98137074 ~ 98186289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939436.1
gtAATCGCGCCCCGCCCCACCCGCCCGCGAGTAGACTCTCCAGTCGCTAGCCTCAAAccaactctctctactgtatcgaTGAAGTTGTTTCAAAGATGGCGGATTTCCTGCCGTCCCGGTCCGTTTTATCTGTGTGTTTTCCAAACTGTCTCCTCACGAGTAACGAGGCAGAACAATTAAGGAAATCTAAAGAAATAGACAAAGGTATTTCGCGGGATAAGCCGTACGTGAAACGGCTGGTGAAGATTCTCCTACTCGGAGCGGGTGAAAGCGGCAAGTCCACTTTCCTGAAGCAGATGCGCATCATCCATGGTCAGGATTTCGATCAAAGGGCCAAAGAAGAGTTCAAGGCCACGATTTTTAGTAATGTAATTAAAGGGGTGCGTGTGTTGGTGGATGCCAGAGAAAAGCTCCACATCCCGTGGGGAGAGGCGTCCAACCAGAGGCACGGAGAGACCATGATGGCGTTTGACACGAGGTCGGCCAGGATGGCCCACGGCATGGTGGAGACCAAGGTCTTCCTGCAGTACCTGCCCTCCATCCAGGCCCTGTGGGCCGACACGGGCATCCAGGACGCCTACGACAGACGCAGGGAGTTCCAACTGgggGAGTCTGTAAAGTATTTCCTGGATCATTTGGAAAAGCTGGGACAGCCGGACTACCTACCGACTCAGCAGGATATTCTCCTGGCCCGTAAGCCCACTAAAGGTATCCACGAGTACGACTTTGAGATCAAGAACGTTCCATTTAAGATGGTGGACGTTGGGGGTCAAAGGTCGGAGAGACGGAGATGGTTTGAGTGTTTTGACTCTGTCACCTCCATCCTCTTCCTCGTCTCCTCTTCAGAGTATGACCAGgtcttGATGGAGGACCGTCAAACCAACCGTCTCAGCGAATCCCTCAACATCTTCGAGACGATCGTCAACAATCGTGTTTTCTCCAACGTCTCCATCATCCTGTTCCTCAACAAGACGGACCTTCTGGAGGACAAGGTGCGCTCGGTCCCCATCAAGGACTATTTCCCAGAGTACCCCGGGGAGCCACACAGCCTGGCCGACGTACAGAGGTTCCTAGTGGACTGTTTCCGGGGGAAGAGGAGGGACGTGACACAGAAGCCCCTGTACCACCACTTCACCACAGCCATCAACACGGAGAACATTCGCCTGGTGTTCCGAGACGTCAAGGACACCATCCTCCACGACAACCTAAAGCAGCTCATGCTGCAGTGACCGCAGGGGGGTTATGACCTTTTTCAAGTCACCTTTTGGCCTTTAACCCCCACCCGTCCCCCCCGTGACTCCTCACCGTGACCCACTGACTTGCCATGATTGCAGGGTGATGAACAGAGAGCAGAAGAGTTGTTGTGTTACACTGTGTCACTGCCTTTTAAGTCACCTTTTGGCCCTTGACCTTTAACCCCTGCGAGCCCTCACCTAGACCCCTGATCTCCAGTCACCTCTGGTGCAGGCTGTCACCTATGACCCTTGACCACTGAACCCTGTTACCACTTCTAATGGCCTTGTACCTGGCAGTtctatccctcccctcttctAAACCACTGTAAATGAGCTCTCCCAATCCCTCCCCTCACACACCCCTCTCCTATCTGTAATGGACTATTCCAGAGTCTGTAGATATGTTGATGTGTTCTGTAGGATGAAGTTGCCCTCAGACTCTGATCCTGGGTCAGTTTTTAattttcccccactaatggttaatgACAGGATATGGGGAGGGGAAGCTGGtcctaaatctgttgttctatATTACTATATTCACTCTGTTGGTTCACTCTTAACTCTCCTGTCTCACTCTGTCACTTTGTAACCTGTCTGAGAAGCCCAGACCACTGCTGGAGGTTAGCGGTCAAGGGTGAAGGGGTCAACTGGCCTTTCTGTGTTGGAGGGAGGAGTCAAAGGTCGTCACCCACGGCAACCAGGGAAGCGGGAGTGGTAAACGCTGTAGAACAAAATGATGATGACTGTGTTTTACTGGCGTCAGCCTGTCGCTATGCACCCCCACTCACACCTGCCCTGAACTGGCTTGATTCTACACTTCCTTTTCCCTCAGAGCCTGATTATGACATCaccgtgccccccccccccccccccccattctgacAGCCAATCAGTGTCGCTATCTGGATGTGGAACCAACTGCAGCGGAGAGCTTGTtacttgttgttgttgctgaGGGGGAAGTTAAAGAGTGGGGGGACTTTACAACACTGTACTAAAACTAATCCTTAATGATTCCACAAATAAGCCTTTTACCACTGTCTGATGATTACCTATCAAACagagctatacacacacacacaccctgcccatAGAGACTCTTCTGACCTGATCCTGGTCTTACTGTTTGGAACTTTTGACTTTTTTCCCCACATAGATTTATTATGAATATATGTACCTAAACATTGTCTTTGTAAGTTATATTTGAAAGGTTTTTACACAAGTTTGATTTACACCTGCTGATGGACAGTGTTAAAGGAAGAGGGTGTGTgaacacacacgctcagacagaCTGGCCCGGACAGACTGGCCCGGACAGACTGGCCCGGACAGACTGGCCCGGACAGACTGGCCCGGACAGACTGGCCCGGACAGACTGGGTCGGACAGACTGGGCCGGACTGACCAGTTGATAAACTACTGAGCTAATTCTCAGGATACATTGTGGACCACTTATTTGTGTATTTAGAGCAATGATGTTAATTTGCCTAAgtcctaaaacacacacacagacagacggacggctGTCCATCAGAGGCTGGTAGTCTAAACAACTTGCCGGCCAGCTACATCCCCTCTTCCAGTCCTTTAtttctcccctctttctgtccctctctctgtcttagtGTAAGCAAGTGATCAGCCTTATAAACCCTGTGGAGGCTCATCCTAGAGGGAAGAGACTGATCAGCCTTATAAACCCTGTGGAGGCTCATCCTAGAGGGAAGAGACTGTGATCAGCCTTATAAACCCTGCGGAGGCTCATCCTAGAGGGAAGAGACAGTGATCCGCCTTATAAACCCTGTGGAGGCTCATCCTAGAGGGAAGAGACTGATCAGCCTTATAAACCCTGTGGAGGCTCATCCTAGAGGGAAGAGACTGTGATCAGCCTTATAAACCCTGTGGAGGCTCATCCTAGAGGGAAGAGACTGATCAGCCTTATAAACCCTGTGGAGGCTCATCCTAGAGGGAAGAGACTGTGATCAGCCTTATAAACCCTGTGGAGGCTCATCCTAGAGGGAAGAGACTGTGATCAGCCTTATAAACCCTGTGGAGGCTCATCCTAGAGGGAAGAGACTGATCAGCCTTATAAACCCCGTGGAGGCTCATCCTAGAGGGAAGAGACTGTGATCAGCCTTATAAACCCTGTGGAGGCTCATCCTAGAGGGAAGAGACTGTGATCAGCCTTATAAACCCTGTGGAGGCTCATCCTAGAGGGAAGAGACTGTGATCAGCCTTATAAACCCCGTGGAGGCTCATCCTAGAGGGAAGAAACTATGATCAGCCTTATAAACCCTGTGGAGGCTCATCCTAGAGGGAAGAGACTGTGATCAGCCTTATAAACCCTGCGGAGGCTCATCCTAGAGGGAAGAGACTGTGATCAGCCTTATAAACTCTGTGGAGGCTCATCCTAGACATACTCTTATCACTCAGTCAGGGGAAAGTGATGGGGAAACTGTGTCAAATGATTTGATTTAATTatgaatctttctctctctccttaactcctCACCAACCAATGTGTCTTTATCTCTAGCAAACCCCCATAGCAGGCCTTTTAAATGAGTTGGACGTTGGGTTTCTACCAACTGAAGGGAAACCAGGAGAATGATACCGTTCACATTGTTGTACCCGTTATGCAGGGGGCGTCTGAAGTCACACCCTACTACTCTCTATCTAGTGCACTGCTTTCAGCCCTGTGTGTCTTTGACAGGGCACTACATAGGGCactatgttattattattaaggTAGTAGGGTGCGGTTTTGCACGTAGACTCCTaaaatctctctcgctctctcgctctctctctctctcgttgtctctctctctctctctctctctctctctctctctctctctctctctcgt

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: guanine nucleotide-binding protein subunit alpha-13

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
K04639 GNA13; guanine nucleotide-binding protein subunit alpha-13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939436.1 True 4107 mRNA 0.50 5 98137074 98186289

Neighbor

gene id symbol gene type direction distance location
LOC110518411 LOC106606198 coding downstream 135481 97979771 ~ 98001593 (-)
LOC110485313 LOC106535622 coding downstream 162326 97959753 ~ 97974748 (-)
LOC110487083 tigd1 coding downstream 187843 97947278 ~ 97949231 (-)
LOC110487090 LOC106606200 coding downstream 193203 97917737 ~ 97943871 (-)
LOC110487093 LOC105031326 coding downstream 258498 97864865 ~ 97878576 (-)
LOC118936513 cog1 coding upstream 44074 98230363 ~ 98259687 (-)
LOC110487128 rogdi coding upstream 79766 98265920 ~ 98283153 (-)
LOC110517726 glyr1 coding upstream 97173 98283462 ~ 98316905 (-)
LOC110485331 ppl coding upstream 146842 98333131 ~ 98380912 (-)
LOC110487126 LOC106602016 coding upstream 380107 98566396 ~ 98571514 (-)
G1131784 NA non-coding downstream 13367 98091189 ~ 98123707 (-)
G1131783 NA non-coding downstream 15416 98090221 ~ 98121658 (-)
G1131782 LOC106594247 non-coding downstream 28934 98075702 ~ 98108140 (-)
G1131781 NA non-coding downstream 30160 98074106 ~ 98106914 (-)
G1131778 NA non-coding downstream 39489 98065697 ~ 98097585 (-)
G1131814 LOC106592915 non-coding upstream 2600 98188889 ~ 98211641 (-)
G1131815 NA non-coding upstream 20474 98206763 ~ 98207237 (-)
G1131828 NA non-coding upstream 27191 98213480 ~ 98215847 (-)
G1131838 NA non-coding upstream 94312 98280601 ~ 98280801 (-)
G1131666 NA other downstream 276556 97857599 ~ 97860518 (-)
G1131720 NA other downstream 283481 97852786 ~ 97853593 (-)
LOC110538882 LOC106601977 other downstream 354251 97764189 ~ 97787224 (-)
G1131656 NA other downstream 423958 97712634 ~ 97713116 (-)
G1131863 NA other upstream 196681 98382970 ~ 98383815 (-)
G1132328 NA other upstream 820338 99006627 ~ 99010112 (-)
LOC118937838 LOC106606233 other upstream 867215 99052890 ~ 99059256 (-)
LOC110538840 LOC106601903 other upstream 905427 99090621 ~ 99092245 (-)

Expression


Co-expression Network