LOC118936514 (smim22)


Basic Information

Item Value
gene id LOC118936514
gene name smim22
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98259570 ~ 98268855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939451.1
CGGATATCCGAAACCCGGAGAGATTGAGCAGGAACCACGGCCATCGCAGCTGAGCTTCGCTGTAAGCGAAATGCCAACCTGAAGGATCTACAACCCGGAAGACGGAGCGAAACTCACTTCCACGTAAACAATGCATCAGAGTCACATCATAAAAGTTTCCTTTGAAAAGACATGGCCAAGAGCAATGGTGGAAATGACTGGCAATATCTCTCACATTCGGTAAGTCCATGATCACGAGACACCTTTAGATCTACTCGGAGGAAATGAAGCAGGATTCAAACGACCTACCCTTGCCCCATGCAAATCAGTGTACAGTGACTCACACGGCGACAGGTGCGTCAGTCCGGCAGGTACCCGGAAGAAGAGAGAAAATAAACTGGAGCTTGTTCGAGTTACAGTGTGTGAACCCTTACTGAGACGAATTCTAGCCCAGCTATAGCCATGGACCAGAGGAGCCTACAGGAAGAGTTTAAGGATCAGTTTACAGACGTGGTGTCCAGACTGCAGTCTAAACAGCTGTTCCAGTCTGACTGGGACATCGCCTCCTTCGCTGTCTTCTTCATCTTCATCGGCATGGTTCTGCTGCTTGTTGTCCTGGTTCTGAtccgctgctgttgctgctgctgctgtgatGAACAGCCGAGAAGACACAAAGTGGGTCATGAAAACTTTGGAATGGAGACCTGAAAGGAACTCGGAACAGAGTAGAAGATTCCACAATGACGACACTTAGAAAATTGATTAGTCCTttttataatacattttattCGATGCACTTTAAAATTTGCACTTTTAATCTGTGTGCCAAACCAAGAGTTGTATAACTTGTTTTCATTCTGGTTCCATCTATTTACTTTTGACTGTTGGAAAATGTTGCACTCCCTGAGGTAACCCGGTTTAGCCGCCGTCTAATGGTGGAATGTCATTGGAGGTCATATGAATCAGTTTGTTTACTTGTTCCCTGCACGGCTAGCGGTTGTTGCTAGGACGCCAGAAAGGAGAGGCAAGGTGAAAACAGTCACCGAGTGTCACAACCAGAAGATTAAAGGGCTTTCACTAACGGTTCATGAAAAAAACTAGGCACCAACTCTTTATGTAGTGGAATCAACGCTGTGTACTTTAAACTTAACTTCTTAAGTGTATGTAATGAGGAACGATAGATAATGTAGTAGTATTGATTCAATGACTTTAATGTAGTTAATTATATTAACAACATAATTCAATGTTGAAACAGGTACATTGTATCATTCAAATGATTAAATAATATTTTGTATTGAA
>TU1287770
AGCAATGGTGGAAATGACTGGCAATATCTCTCACATTCGGTAAGTCCATGATCACGAGACACCTTTAGATCTACTCGGAGGAAATGAAGCAGGATTCAAACGACCTACCCTTGCCCCATGCAAATCAGTGTACAGTGACTCACACGGCGACAGGTGCGTCAGTCCGGCAGGTACCCGGAAGAAGAGAGAAAATAAACTGGAGCTTGTTCGAGTTACAGTGTGTGAACCCTTACTGAGACGAATTCTAGCCCAGCTATAGCCATGGACCAGAGGAGCCTACAGGAAGAGTTTAAGGATCAGTTTACAGACGTGGTGTCCAGACTGCAGTCTAAACAGCTGTTCCAGTCTGACTGGGACATCGCCTCCTTCGCTGTCTTCTTCATCTTCATCGGCATGGTTCTGCTGCTTGTTGTCCTGGTTCTGAtccgctgctgttgctgctgctgctgtgatGAACAGCCGAGAAGACACAAAGTGGGTCATGAAAACTTTGGAATGGAGACCTGAAAGGAACTCGGAACAGAGTAGAAGATTCCACAATGACGACACTTAGAAAATTGATTAGTCCTttttataatacattttattCGATGCACTTTAAAATTTGCACTTTTAATCTGTGTGCCAAACCAAGAGTTGTATAACTTGTTTTCATTCTGGTTCCATCTATTTACTTTTGACTGTTGGAAAATGTTGCACTCCCTGAGGTAACCCGGTTTAGCCGCCGTCTAATGGTGGAATGTCATTGGAGGTCATATGAATCAGTTTGTTTACTTGTTCCCTGCACGGCTAGCGGTTGTTGCTAGGACGCCAGAAAGGAGAGGCAAGGTGAAAACAGTCACCGAGTGTCACAACCAGAAGATTAAAGGGCTTTCACTAACGGTTCATGAAAAAAACTAGGCACCAACTCTTTATGTAGTGGAATCAACGCTGTGTACTTTAAACTTAACTTCTTAAGTGTATGTAATGAGGAACGATAGATAATGTAGTAGTATTGATTCAATGACTTTAATGTAGTTAATTATATTAACAACATAATTCAATGTTGAAACAGGTACATTGTATCATTCAAATGATTAAATAATATTTTGTATTGAA
>TU1287769
GTGCGTCAGTCCGGCAGGTACCCGGAAGAAGAGAGAAAATAAACTGGAGCTTGTTCGAGTTACAGTGTGTGAACCCTTACTGAGACGAATTCTAGCCCAGCTATAGCCATGGACCAGAGGAGCCTACAGGAAGAGTTTAAGGATCAGTTTACAGACGTGGTGTCCAGACTGCAGTCTAAACAGCTGTTCCAGTCTGACTGGGACATCGCCTCCTTCGCTGTCTTCTTCATCTTCATCGGCATGGTTCTGCTGCTTGTTGTCCTGGTTCTGAtccgctgctgttgctgctgctgctgtgatGAACAGCCGAGAAGACACAAAGTGGGTCATGAAAACTTTGGAATGGAGACCTGAAAGGAACTCGGAACAGAGTAGAAGATTCCACAATGACGACACTTAGAAAATTGATTAGTCCTttttataatacattttattCGATGCACTTTAAAATTTGCACTTTTAATCTGTGTGCCAAACCAAGAGTTGTATAACTTGTTTTCATTCTGGTTCCATCTATTTACTTTTGACTGTTGGAAAATGTTGCACTCCCTGAGGTAACCCGGTTTAGCCGCCGTCTAATGGTGGAATGTCATTGGAGGTCATATGAATCAGTTTGTTTACTTGTTCCCTGCACGGCTAGCGGTTGTTGCTAGGACGCCAGAAAGGAGAGGCAAGGTGAAAACAGTCACCGAGTGTCACAACCAGAAGATTAAAGGGCTTTCACTAACGGTTCATGAAAAAAACTAGGCACCAACTCTTTATGTAGTGGAATCAACGCTGTGTACTTTAAACTTAACTTCTTAAGTGTATGTAATGAGGAACGATAGATAATGTAGTAGTATTGATTCAATGACTTTAATGTAGTTAATTATATTAACAACATAATTCAATGTTGAAACAGGTACATTGTATCATTCAAATGATTAAATAATATTTTGTATTGAA
>TU1287771
GTGCGTCAGTCCGGCAGGTACCCGGAAGAAGAGAGAAAATAAACTGGAGCTTGTTCGAGTTACAGTGTGTGAACCCTTACTGAGACGAATTCTAGCCCAGCTATAGCCATGGACCAGAGGAGCCTACAGGAAGAGTTTAAGGATCAGTTTACAGACGTGGTGTCCAGACTGCAGTCTAAACAGCTGTTCCAGTCTGACTGGGACATCGCCTCCTTCGCTGTCTTCTTCATCTTCATCGGCATGGTTCTGCTGCTTGTTGTCCTGGTTCTGAtccgctgctgttgctgctgctgctgtgatGAACAGCCGAGAAGACACAAAGTGGGTCATGAAAACTTTGGAATGGAGACCTGAAAGGAACTCGGAACAGAGTAGAAGATTCCACAATGACGACACTTAGAAAATTGATTAGTCCTttttataatacattttattCGATGCACTTTAAAATTTGCACTTTTAATCTGTGTGCCAAACCAAGAGTTGTATAACTTGTTTTCATTCTGGTTCCATCTATTTACTTTTGACTGTTGGAAAATGTTGCACTCCCTGAGGTAACCCGGTTTAGCCGCCGTCTAATGGTGGAATGTCATTGGAGGTCATATGAATCAGTTTGTTTACTTGTTCCCTGCACGGCTAGCGGTTGTTGCTAGGACGCCAGAAAGGAGAGGCAAGGTGAAAACAGTCACCGAGTGTCACAACCAGAAGATTAAAGGGCTTTCACTAACGGTTCATGAAAAAAACTAGGCACCAACTCTTTATGTAGTGGAATCAACGCTGTGTACTTTAAACTTAACTTCTTAAGTGTATGTAATGAGGAACGATAGATAATGTAGTAGTATTGATTCAATGACTTTAATGTAGTTAATTATATTAACAACATAATTCAATGTTGAAACAGGTACATTGTATCATTCAAATGATTAAATAATATTTTGTATTGAATCTGTCCCCGATTGACTGACCGAACACTCCAGTATAACACCTCTTTATTGCACAGATAATAGATCATATGGTCCACAACATATACATTGTACGCATCTCTAAACAGTTTTTAAAACACTTGCAGTAATAATGATTTTTGTTCGACATTGGAATGGGATCTTCACTTCACAGGGAATCAACAAAAGGCAAAGTAACAAGTGCAAAAATTAAACAATTgaataaataaaatcattagCAAAACAACACATTAAAATGAACTGATACAATGACGAATAACAGCTTATTGTTGAGGAGAACGTTTACTTTTCAAAAGCTGGGAATGTCCGTTTTCCTTTACACTTGACATAAAAGCGGCATTCCAAGGAATATAGAGTCAGAAACCTTACAAGTTAATTTCACTGAAGAGTCACTGTGTTTCATGTCTCATACTACTGCTGAGTAGTGTAGTCTACACAAAATAACAGTATGTCCTACTGTGGTAAACCAATCTGCTTGACAAATTTAGTTTCCAATACCTTTTTCACACTGCTGAGCAAACCAAGCTGGCCTGGTTACTCATTAACCGTAGATGCTGGAACCGTGTAGGAGAAGACGATGCGTTTGTATCGGTCCCTACCCAAATAAACCATAAATTAAAATTTAAAATATCTTTTGGTCGCTATTATAGTGTGAAAAGGGTGTGTGGAAAGGAGGAACGTTAGTATTCAGTAACAAGAGAAGTGTTTCAGACTAAAACAACACAAGCTGATCCATTGATTCATAACGAGGTCCTAGTTAGTACTATACAAGTCCAACCAAGTTAGTACTATACAACAGGGAGGTCCAACCAAGTTAGTTAGTACTATACAAGTCCAACCAAGTTAGTTAGTACTATACAACAGGGAGGTTCAAGTTAGTTAGTACTATACAACAGGGAGGTCCTAGTTAGTTAGTACTATACAACAGGGAGGTCCTAGTTAGTTAGTACTATACAACAGGGAGGTCCTAGTTAGTTAGTACTATACAACAGGGAGGTCCTAGTTAGTTAGTACTATACAACAGGGAGGTCCTAGTTAGTTAGTACTATACAACAGGGAGGTCCTAGTTAGTTAGTACTATACAACAGGGAGGTCCTAGTTAGTTAGTACTATACAACAGATGACGCACAGAGAGATACATGCACCCAATCCTAAATCAACCCCTAGTCCCTACTTGTCTAGATCAGAATGCAGTATTCCCCCTATATTCATTCCCATAGACTTCTAGTCATGCAGTGTTTCCCCCTATATTCATTCCCATAGACTTCTAGtcatgcagtgtttcccctatattcattcccatagacttctagtcatgcagtgtttcccctatattcattcCCATAGACTTCTAGTCATGCAGTGTTTCCCCCTATATTCATTCCCATAGACTTCTAGtcatgcagtgtttcccctatattcattcCCATAGACTTCTAGTCATGCAGTATTTCCCCCTATATTCATTCCCATAGACTTCTAGTCATGCAGTATTTCCCCCTATATTCATTCCCATAGACTTCTAGtcatgcagtgtttcccctatattcattcccatagacttctagtcatgcagtgtttcccctatattcattcccatagacttctagtcattgcgctaacgaCCCCCATCTAGGGGAAACACAATGTATTGGATAGATATAGCAACATGGTAGTAGCCCCACCATATTGCTTAGCCCTATACTTTCTTCACAAGTAGGGAGTGTagtctaggggttagggtttgatTTGGGACTGAATTAAAGCAGCTGTAACACATGGATGGGCCCTAAAACCCTGGAATACTAAACACTGGTAATGTATTTGGACTTTGATCCGGCTGTTCTCCTGTAAATTATACAAACAAAACCCACTTCAATTCAGACAATATTTTCAAGACATCCCTTTTATCTGGGTTGGTTGGTGTGAAGGATTTGGACAGAACCCCTAGGCATTCTGACGGTCAGCTAACTGCAGGAGGTTAGAACTCCTAGGCATTCTGACGGTCAGCTAGCTGCAGGAGGTTAGAACCCCTAGGCATTCTGACGGTCAGCTAGCTGCAGGAGGTTAGAACACCTAGGCATTCTGACGGTCAGCTAGCTGCAGGATGTTTAGAACTCCTAGGCATTCTGACGGTCAGCTAGCTGCAGGAGGTTAGAACCCCTAGGCATTCTGACGGTCGGCTAGCTGCAGGAGGTTAGAACGGTCGGTAGTTCCAGAAACTAGAGAAGACAGAAAtctaga

Function

symbol description
smim22 Involved in several processes, including lipid droplet formation; positive regulation of cell migration; and regulation of actin cytoskeleton organization. Predicted to be located in late endosome. Predicted to be integral component of membrane.

NR:

description
small integral membrane protein 22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939451.1 False 1278 mRNA 0.43 5 98259570 98266027
TU1287770 False 1098 TUCP 0.42 4 98260009 98266027
TU1287769 False 945 TUCP 0.41 4 98260162 98266027
TU1287771 True 3206 lncRNA 0.41 6 98260162 98268855

Neighbor

gene id symbol gene type direction distance location
LOC110516721 LOC105012791 coding upstream 41285 98187732 ~ 98218285 (+)
LOC118937837 LOC106594247 coding upstream 137492 98101643 ~ 98122078 (+)
LOC110485325 LOC105012794 coding upstream 169197 98065664 ~ 98090718 (+)
LOC110487112 LOC106594630 coding upstream 200119 98022211 ~ 98059451 (+)
LOC118937811 LOC106606197 coding upstream 242400 98003597 ~ 98017170 (+)
LOC110487124 LOC105006040 coding downstream 159733 98425760 ~ 98564239 (+)
LOC110516605 LOC106592968 coding downstream 710306 98976333 ~ 98977246 (+)
LOC110539183 LOC106606365 coding downstream 804969 99070996 ~ 99088300 (+)
epn3a LOC105006167 coding downstream 851374 99117401 ~ 99175955 (+)
LOC110538843 LOC106601911 coding downstream 917090 99183117 ~ 99188055 (+)
G1131567 cog1 non-coding upstream 7236 98248097 ~ 98252334 (+)
G1131569 NA non-coding upstream 8360 98250283 ~ 98251210 (+)
G1131565 cog1 non-coding upstream 18005 98240748 ~ 98241565 (+)
G1131560 NA non-coding upstream 28480 98230141 ~ 98231090 (+)
G1131557 NA non-coding upstream 33971 98219753 ~ 98225599 (+)
G1131575 NA non-coding downstream 7173 98273200 ~ 98274541 (+)
G1131540 NA non-coding downstream 16920 98282947 ~ 98283150 (+)
G1131543 NA non-coding downstream 20736 98286763 ~ 98289488 (+)
G1131592 NA non-coding downstream 53848 98319875 ~ 98320186 (+)
G1131598 NA non-coding downstream 66428 98332455 ~ 98333012 (+)
G1131438 NA other upstream 437513 97820724 ~ 97822057 (+)
G1130780 LOC106606334 other upstream 1096491 97162262 ~ 97163079 (+)
LOC118937804 LOC106591169 other upstream 1557633 96676774 ~ 96702725 (+)
G1130570 alg1 other upstream 1626118 96618256 ~ 96633452 (+)
LOC110538761 LOC106606716 other upstream 2628995 95629494 ~ 95815227 (+)
G1132060 NA other downstream 458830 98724857 ~ 98725197 (+)
G1132058 NA other downstream 497932 98762440 ~ 98767257 (+)
G1132082 NA other downstream 516112 98782139 ~ 98783327 (+)
G1132093 NA other downstream 529731 98795758 ~ 98797512 (+)
G1132174 NA other downstream 708416 98974443 ~ 98974926 (+)

Expression


Co-expression Network