LOC110516605 (LOC106592968)


Basic Information

Item Value
gene id LOC110516605
gene name LOC106592968
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 98976333 ~ 98977246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021594997.2
atggggttatggctccaacatgtcatactgtctatggaacctatggggtCATGGCTCCAGTGGGTGTGGTGTTATTTCGCAGTGTCAGATCCTACATAGCGGTGACCAAAGTGAAGACCGTGCTGCAGCCTGTGCACCTGGACGCCAGCGAACCCTGGGAGAAGTGGGCGGGCCTTCCACGCGGGGCCTGTGATGTCATCGTGGCCATTAACCTGCTTCAGTGCAGCTCTTTCGACACCGTAGAGggCGTCGTCAAAGGATCAGGACAGATCCTCAGACAAAATGGTCTCTTGATCACACATGGGccCTACGCCATCAACGGCACCATCACCCCCAGCTGTATGGAGGACTTGGACCAGGAACTACGACAGATGAACCCAGGGTGGGGTCTACCAGACATCGACATTCTGAGACAGCTGGCGTTTGGGAACGGGATGCGCATGGAGAGGATGGTGAGTCTCTTTAACCAGTCTGCTGGTGTGTATGTATAAACTAATGTATCTTTAAGGATGGactatactgtacacacagaacATGTAACATGGGT
>TU1288659
ctccaacatgtcatactgtctatggaacctatggggtCATGGCTCCAGTGGGTGTGGTGTTATTTCGCAGTGTCAGATCCTACATAGCGGTGACCAAAGTGAAGACCGTGCTGCAGCCTGTGCACCTGGACGCCAGCGAACCCTGGGAGAAGTGGGCGGGCCTTCCACGCGGGGCCTGTGATGTCATCGTGGCCATTAACCTGCTTCAGTGCAGCTCT

Function

NR:

description
methyltransferase-like 26 B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021594997.2 False 547 mRNA 0.53 4 98976333 98977246
TU1288659 True 218 lncRNA 0.57 1 98976345 98976562

Neighbor

gene id symbol gene type direction distance location
LOC110487124 LOC105006040 coding upstream 412094 98425760 ~ 98564239 (+)
LOC118936514 smim22 coding upstream 710306 98259570 ~ 98268855 (+)
LOC110516721 LOC105012791 coding upstream 758048 98187732 ~ 98218285 (+)
LOC118937837 LOC106594247 coding upstream 854255 98101643 ~ 98122078 (+)
LOC110485325 LOC105012794 coding upstream 885960 98065664 ~ 98090718 (+)
LOC110539183 LOC106606365 coding downstream 93750 99070996 ~ 99088300 (+)
epn3a LOC105006167 coding downstream 140155 99117401 ~ 99175955 (+)
LOC110538843 LOC106601911 coding downstream 205871 99183117 ~ 99188055 (+)
LOC110538844 tbcd coding downstream 211639 99188885 ~ 99322871 (+)
LOC110485297 LOC106592354 coding downstream 718360 99695572 ~ 99698337 (+)
G1132173 NA non-coding upstream 2252 98973762 ~ 98974081 (+)
G1132172 NA non-coding upstream 10927 98963594 ~ 98965406 (+)
G1132166 NA non-coding upstream 26969 98947881 ~ 98949364 (+)
G1132153 NA non-coding upstream 74084 98901635 ~ 98902249 (+)
G1132119 NA non-coding upstream 135674 98840126 ~ 98840659 (+)
G1132087 NA non-coding downstream 3164 98980410 ~ 98981627 (+)
G1132188 NA non-coding downstream 26125 99003371 ~ 99004125 (+)
G1132192 NA non-coding downstream 33042 99010288 ~ 99012932 (+)
G1132196 NA non-coding downstream 47410 99024656 ~ 99024928 (+)
G1132197 NA non-coding downstream 47790 99025036 ~ 99025357 (+)
G1132174 NA other upstream 1407 98974443 ~ 98974926 (+)
G1132093 NA other upstream 178821 98795758 ~ 98797512 (+)
G1132082 NA other upstream 193006 98782139 ~ 98783327 (+)
G1132058 NA other upstream 209076 98762440 ~ 98767257 (+)
G1132060 NA other upstream 251136 98724857 ~ 98725197 (+)
G1132187 NA other downstream 24110 99001356 ~ 99001773 (+)

Expression


Co-expression Network