LOC110538838 (LOC105029615)


Basic Information

Item Value
gene id LOC110538838
gene name LOC105029615
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99021958 ~ 99027957 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625816.2
cacacaagcGTATGCTTCTACCCACTGCCACACAGACTTGCGCTAGCTGGCATCTCAGAGGGCAGCCCTCTCtccagtcctgtcctgtcctgggtGTTGAAGCTAGCTGGATGTTGAAGCTCTTCACCCCCTCTGCAGAAGCCAACCTGACCTCTCAGGTCCTCGTTCGTACCTGTGGACTGAGCTGAACCTTCCAaggcctctgtctctgcctccccctgaaccagccaACCCGGTTACCTACATCCACCTCTGACCTATACAACCACAGCTCCACAGGACTGCTGAAGAACACGTTGCTTCTCCAACGACTgcttggaagaggagaggagattcaTCACACTCCATCTGAGGACGTTTGGCCTCGTCTGTCCCCAGTTGGTCTCCGCATCaaccagagagaaggagagggtcaagaagaagaggaggaggaagacatcTGTTTTTCAAGATTTCGGGGGTGCATAGACTTTCCACGGCTTGGGACTATTTTAGTGAGACAAAGAGAAAGGACTTTAACATCCCAGTAACAACCAACGTGGTACAAATACTTACGAAAATCCAGCCAAATACCGGTAGACATCGTCAACCGTCACCACAACCGTTACTActgccacaacaacaacagcctgaCACCTTAACCATGGCGACCACCGGCATGCAGCTCCTGGGCCTGATCTTGTCTCTGGTTGGCTGGGTGGGCGGCTTCCTGGTATGCTCTGTTCCGCTGTGGCGCGTCACCGCCTTCATCGGCAACAACATCGTGACGGCTCAGATCATCTGGGAGGGGCTGTGGATGACCTGCATCGTCCAATCAACGGGCCAGATCCAGTGCAAGGTGTACGACAGTCTCTTGGCCCTGCCCAGCGACATGCAGGCGGCCCGGGGCCTCACCGTGCTCTCCGTCCTCCTCTGTGGCCTGGCCCTGGCTCTAGGTGTGGTGGGGGTAAAGTGCACCAAGTGTATTGGTCAGAATAGTCTGAAGGCTCGTATTGCAAGGATCTCCGGCTTTCTGTTCGGCATCGCTGGGTTTCTCTACCTGGTTCCTATCTGCTGGACGGCCCACTCCATTATCAGGGACTTCTATGATCCCCACGTGGCCGCGCCGCACAAGAGAGAGCTAGGCCCCGCCCTATACCTAGGCTGGGGGGCGTCGGCCTTGCTCCTGATTGGTGGGTCGCTGCTGTATGCGGGGTCGAGTCCTCCCGGCATCCCCGGGTCTCCGACCTTCAGCAGCGACAGCAGCCCCCGTAGAGGACCTGCTGCTCAGGTCAAAGGTTATGTCTGATCGGAATGCCACAAAACCCCATGATTCCATGATTCCGAGATTCTATGATTCCATGATTCCGCCCTGACAACATGAAAAACCCTCCTCTCTTAGTATTTATACTTTTTAATACTTTGGAAtgttaatgttattattattattcggtGGTGCTTTTTGTCATTCTTTCAAAAGATGCAATAGGAGGTTATGAAGGGAATTGTGAAATCATTTTGCTATTTCATGTGTCCCTGTTGTCCTCCGATAACCCTattgtctgtcagtctgtctgtctgtcagtgtaaaACCCAATAAAATCATCAGCCTTTCATTTCCTCTCTGGGAAA
>TU1288914
cagacacacaagcGTATGCTTCTACCCACTGCCACACAGACTTGCGCTAGCTGGCATCTCAGAGGGCAGCCCTCTCtccagtcctgtcctgtcctgggtGTTGAAGCTAGCTGGATGTTGAAGCTCTTCACCCCCTCTGCAGAAGCCAACCTGACCTCTCAGGTCCTCGTTCGTACCTGTGGACTGAGCTGAACCTTCCAaggcctctgtctctgcctccccctgaaccagccaACCCGGTTACCTACATCCACCTCTGACCTATACAACCACAGCTCCACAGGACTGCTGAAGAACACGTTGCTTCTCCAACGACTgcttggaagaggagaggagattcaTCACACTCCATCTGAGGACGTTTGGCCTCGTCTGTCCCCAGTTGGTCTCCGCATCaaccagagagaaggagagggtcaagaagaagaggaggaggaagacatcTGTTTTTCAAGATTTCGGGGGTGCATAGACTTTCCACGGCTTGGGACTATTTTAGTGAGACAAAGAGAAAGGACTTTAACATCCCAGTAACAACCAACGTGGTACAAATACTTACGAAAATCCAGCCAAATACCGGTAGACATCGTCAACCGTCACCACAACCGTTACTActgccacaacaacaacagcctgaCACCTTAAC
>TU1288915
GGCTAACAGCTGGATAGATACTCCAGAAGCCAACCTGACCTCTCAGGTCCTCGTTCGTACCTGTGGACTGAGCTGAACCTTCCAaggcctctgtctctgcctccccctgaaccagccaACCCGGTTACCTACATCCACCTCTGACCTATACAACCACAGCTCCACAGGACTGCTGAAGAACACGTTGCTTCTCCAACGACTgcttggaagaggagaggagattcaTCACACTCCATCTGAGGACGTTTGGCCTCGTCTGTCCCCAGTTGGTCTCCGCATCaaccagagagaaggagagggtcaagaagaagaggaggaggaagacatcTGTTTTTCAAGATTTCGGGGGTGCATAGACTTTCCACGGCTTGGGACTATTTTAGTGAGACAAAGAGAAAGGACTTTAACATCCCAGTAACAACCAACGTGGTACAAATACTTACGAAAATCCAGCCAAATACCGGTAGACATCGTCAACCGTCACCACAACCGTTACTActgccacaacaacaacagcctgaCACCTTAAC

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625816.2 False 1611 mRNA 0.53 2 99021958 99025388
TU1288914 False 646 lncRNA 0.52 2 99022927 99025392
TU1288915 True 530 lncRNA 0.50 3 99022927 99027957

Neighbor

gene id symbol gene type direction distance location
LOC110539185 hgs coding downstream 2325 98981732 ~ 99019633 (-)
LOC110514497 LOC106602019 coding downstream 115515 98766105 ~ 98906443 (-)
LOC110487126 LOC106602016 coding downstream 450444 98566396 ~ 98571514 (-)
LOC110485331 ppl coding downstream 641046 98333131 ~ 98380912 (-)
LOC110517726 glyr1 coding downstream 705053 98283462 ~ 98316905 (-)
btr02 LOC106606318 coding upstream 2780 99028168 ~ 99040834 (-)
LOC110538834 LOC106601838 coding upstream 16631 99042019 ~ 99045620 (-)
LOC118937838 LOC106606233 coding upstream 27896 99052890 ~ 99059256 (-)
LOC110538840 LOC106601903 coding upstream 65233 99090621 ~ 99092245 (-)
LOC110538845 LOC106606260 coding upstream 152698 99178086 ~ 99183106 (-)
G1132303 NA non-coding downstream 1649 98979666 ~ 99020309 (-)
G1132330 NA non-coding downstream 9042 99011586 ~ 99012916 (-)
G1132319 NA non-coding downstream 28076 98993358 ~ 98993882 (-)
G1132326 NA non-coding downstream 34763 98986216 ~ 98987195 (-)
G1132339 NA non-coding upstream 7905 99033293 ~ 99033538 (-)
G1132342 NA non-coding upstream 21030 99046418 ~ 99047786 (-)
G1132340 NA non-coding upstream 22899 99048287 ~ 99051795 (-)
G1132349 NA non-coding upstream 36334 99061722 ~ 99061936 (-)
G1132328 NA other downstream 11846 99006627 ~ 99010112 (-)
G1131863 NA other downstream 638143 98382970 ~ 98383815 (-)
LOC118936513 cog1 other downstream 762271 98230363 ~ 98259687 (-)
LOC110485313 LOC106535622 other downstream 1047238 97959753 ~ 97974748 (-)
G1131666 NA other downstream 1161440 97857599 ~ 97860518 (-)
G1132564 NA other upstream 140560 99165948 ~ 99166607 (-)
G1132569 LOC106606209 other upstream 148277 99173665 ~ 99177478 (-)

Expression


Co-expression Network