btr02 (LOC106606318)


Basic Information

Item Value
gene id btr02
gene name LOC106606318
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99028168 ~ 99040834 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939468.1
tttaatcaattttagaataaggctgtaatcgaacaaaatgtggaaaaagtcaaggggtctgaatactttcgaaagGCAGTGTATCCCAACTGACTAGTTGATTCAGTTGAACCTTGAAGCGAGTGAATACTGTGGCTTTTAACGCACACTCTCATTCCATTGGGAAAAAATGAATGGGGGAAACCTTCAATAACTTGTTTAAATTTTGTATTTGGCCAATCAAATGGAAGTATTACGTGACAAGAACATGAAGGGCATGgcatctaccatctctaccatcagcCTCGTCTCCGAGAGGCACTTCCTGTGCCCGCTGTGTAAGGACATCTTCAGCAGTCCTGTGACTACTCCGTGTGGCCACAGTTTCTGTCAGGACTGCCTGTGTGGGTACTGGACCCGGCACCGTTCAGACTACTGTCCCCTCTGCAAGAGGTTGTTCCATTCCAGGCCAGACCTTAGTATCAACCGCATCCTGGCTGACGTCTGTGACAACTACAGGAAGACACGGCCTGAGAGCCCTGAGGAGAGCCACGACACGCCACAGGTTGTAGACATTGACCAGATGATCCAGGAGCGACTGAAGAAAGTTGACAGACTCAGACACTCCCTGCAGCTCCTCAAAAACTCGTGTGTGAGGGAGGTGCGTGAGAGCCAGAAGGTGTTCTCTGCCCTTGTCAGTTCCATGGAGAAGAGCCACAAGGCCGTGGTGGCAGCCattgaggagagacagggggaggaggagAGGATTGTTGAGAAGCTGGTGAAGGAGCTGGAACAGGAGATTCTACAGCTGAGGAATGGAGACATTGACCTGGGGCCTTGTCATTCTCAGCAGAGCAATGATGAgctctgtggtggtggtggtggtcagaAGAGTGTTGCAGTGAGCACCACTTCCACCACGGGCTACTCTGAGAGGAGGGACTGGTCCAAGGTTTCCATGGAGACAGACCCCTGTATGGGCGTGACCAGGAGAGCAGTGTCAGACCTGATGGACGTGGTTAAAGGAGAGCTCCGTAGACTCTCTAAAGCTGAGCTgaagaaaatacagaaatacacagTAGACATCTCCCTGAGTCCCAAGACGGCCCACGCCTTCCTCTCGGTCTCAGACGACCGGAAACAGGTgcgacacacagacaaacaccagGAGGTCCCAGACAACCCCAAGAGGTTTGACCGCGTGGCCAACATCCTGGGAAGAGAATCCTTCAGCAGCGGCAGgtactactgggaggtggaggtgggagagaAGATTGAGTGGAACCTGGGCGTGGCCAGACAGTCCATCAACAGGAAAGGGAAGTTTACAGTCAGCCCAGCCAATGGCTTCTGGACACTGAGCCTAAAGAGCGGGGGTCAATACGTAGCTAACACCTCCCCCACTGTCACCCCCTTGGGCCTGGAGCAGAAGCCCAGGAAGGTGGGGGTGTTTCTGGACTacgtggagggccgagtgtcctTCTACTGCGCGGAGACTGGGGTTCACATCCATACGTTTACAGATGGCTTCACTGATAGACTACATCCACTCTTTAGTCCTGGGAGGCAACATGGGGGCAGGAATATCGCTCCTCTGACTATTTGTACTACCTTCTGTAGCATCTGAGCCCCCTGACTTAACCCCCACGCCTGGAATAGTCATTTAATCATGTCATTATGTAGCCTAATGTAGAATAAGGCTCACTCGGTCCTCTCTCACGTCTGCATTTTCAGTTGGATAAACCGGCttctttcctaatattgagttaatgcagtgtctgtgttATCAGGCAATGAGCTGGGTAATCAATAGTAATgctataatttattttaattatAATTTATGACAGTATATATGAAccctcaaatgtattttttttacaaagtgTTGACTTTTTTTAAAATTCTGTGCATCATTAAAAAATCTGTAAATTA
>XM_036939469.1
atttaatcaattttagaataaggctgtaatcgaacaaaatgtggaaaaagtcaaggggtctgaatactttcgaaagGCAGTGTATCCCAACTGACTAGTTGATTCAGTTGAACCTTGAAGCGAGTGAATACTGTGGCTTTTAACGCACACTCTCATTCCATTGGGAAAAAATGAATGGGGGAAACCTTCAATAACTTGTTTAAATTTTGTATTTGGCCAATCAAATGGAAGTATTACGTGACAAGAACATGAAGGGCATGgcatctaccatctctaccatcagcCTCGTCTCCGAGAGGCACTTCCTGTGCCCGCTGTGTAAGGACATCTTCAGCAGTCCTGTGACTACTCCGTGTGGCCACAGTTTCTGTCAGGACTGCCTGTGTGGGTACTGGACCCGGCACCGTTCAGACTACTGTCCCCTCTGCAAGAGGTTGTTCCATTCCAGGCCAGACCTTAGTATCAACCGCATCCTGGCTGACGTCTGTGACAACTACAGGAAGACACGGCCTGAGAGCCCTGAGGAGAGCCACGACACGCCACAGGTTGTAGACATTGACCAGATGATCCAGGAGCGACTGAAGAAAGTTGACAGACTCAGACACTCCCTGCAGCTCCTCAAAAACTCGTGTGTGAGGGAGGTGCGTGAGAGCCAGAAGGTGTTCTCTGCCCTTGTCAGTTCCATGGAGAAGAGCCACAAGGCCGTGGTGGCAGCCattgaggagagacagggggaggaggagAGGATTGTTGAGAAGCTGGTGAAGGAGCTGGAACAGGAGATTCTACAGCTGAGGAATGGAGACATTGACCTGGGGCCTTGTCATTCTCAGCAGAGCAATGATGAgctctgtggtggtggtggtggtcagaAGAGTGTTGCAGTGAGCACCACTTCCACCACGGGCTACTCTGAGAGGAGGGACTGGTCCAAGGTTTCCATGGAGACAGACCCCTGTATGGGCGTGACCAGGAGAGCAGTGTCAGACCTGATGGACGTGGTTAAAGGAGAGCTCCGTAGACTCTCTAAAGCTGAGCTgaagaaaatacagaaatacacagACATCTCCCTGAGTCCCAAGACGGCCCACGCCTTCCTCTCGGTCTCAGACGACCGGAAACAGGTgcgacacacagacaaacaccagGAGGTCCCAGACAACCCCAAGAGGTTTGACCGCGTGGCCAACATCCTGGGAAGAGAATCCTTCAGCAGCGGCAGgtactactgggaggtggaggtgggagagaAGATTGAGTGGAACCTGGGCGTGGCCAGACAGTCCATCAACAGGAAAGGGAAGTTTACAGTCAGCCCAGCCAATGGCTTCTGGACACTGAGCCTAAAGAGCGGGGGTCAATACGTAGCTAACACCTCCCCCACTGTCACCCCCTTGGGCCTGGAGCAGAAGCCCAGGAAGGTGGGGGTGTTTCTGGACTacgtggagggccgagtgtcctTCTACTGCGCGGAGACTGGGGTTCACATCCATACGTTTACAGATGGCTTCACTGATAGACTACATCCACTCTTTAGTCCTGGGAGGCAACATGGGGGCAGGAATATCGCTCCTCTGACTATTTGTACTACCTTCTGTAGCATCTGAGCCCCCTGACTTAACCCCCACGCCTGGAATAGTCATTTAATCATGTCATTATGTAGCCTAATGTAGAATAAGGCTCACTCGGTCCTCTCTCACGTCTGCATTTTCAGTTGGATAAACCGGCttctttcctaatattgagttaatgcagtgtctgtgttATCAGGCAATGAGCTGGGTAATCAATAGTAATgctataatttattttaattatAATTTATGACAGTATATATGAAccctcaaatgtattttttttacaaagtgTTGACTTTTTTTAAAATTCTGTGCATCATTAAAAAATCTGTAAATTA
>XM_036939470.1
atttaatcaattttagaataaggctgtaatcgaacaaaatgtggaaaaagtcaaggggtctgaatactttcgaaagGCAGTGTATCCCAACTGACTAGTTGATTCAGTTGAACCTTGAAGCGAGTGAATACTGTGGCTTTTAACGCACACTCTCATTCCATTGGGAAAAAATGAATGGGGGAAACCTTCAATAACTTGTTTAAATTTTGTATTTGGCCAATCAAATGGAAGTATTACGTGACAAGAACATGAAGGGCATGgcatctaccatctctaccatcagcCTCGTCTCCGAGAGGCACTTCCTGTGCCCGCTGTGTAAGGACATCTTCAGCAGTCCTGTGACTACTCCGTGTGGCCACAGTTTCTGTCAGGACTGCCTGTGTGGGTACTGGACCCGGCACCGTTCAGACTACTGTCCCCTCTGCAAGAGGTTGTTCCATTCCAGGCCAGACCTTAGTATCAACCGCATCCTGGCTGACGTCTGTGACAACTACAGGAAGACACGGCCTGAGAGCCCTGAGGAGAGCCACGACACGCCACAGGTTGTAGACATTGACCAGATGATCCAGGAGCGACTGAAGAAAGTTGACAGACTCAGACACTCCCTGCAGCTCCTCAAAAACTCGTGTGTGAGGGAGGTGCGTGAGAGCCAGAAGGTGTTCTCTGCCCTTGTCAGTTCCATGGAGAAGAGCCACAAGGCCGTGGTGGCAGCCattgaggagagacagggggaggaggagAGGATTGTTGAGAAGCTGGTGAAGGAGCTGGAACAGGAGATTCTACAGCTGAGGAATGGAGACATTGACCTGGGGCCTTGTCATTCTCAGCAGAGCAATGATGAgctctgtggtggtggtggtggtcagaAGAGTGTTGCAGTGAGCACCACTTCCACCACGGGCTACTCTGAGAGGAGGGACTGGTCCAAGGTTTCCATGGAGACAGACCCCTGTATGGGCGTGACCAGGAGAGCAGTGTCAGACCTGATGGACGTGGTTAAAGGAGAGCTCCGTAGACTCTCTAAAGCTGTAGACATCTCCCTGAGTCCCAAGACGGCCCACGCCTTCCTCTCGGTCTCAGACGACCGGAAACAGGTgcgacacacagacaaacaccagGAGGTCCCAGACAACCCCAAGAGGTTTGACCGCGTGGCCAACATCCTGGGAAGAGAATCCTTCAGCAGCGGCAGgtactactgggaggtggaggtgggagagaAGATTGAGTGGAACCTGGGCGTGGCCAGACAGTCCATCAACAGGAAAGGGAAGTTTACAGTCAGCCCAGCCAATGGCTTCTGGACACTGAGCCTAAAGAGCGGGGGTCAATACGTAGCTAACACCTCCCCCACTGTCACCCCCTTGGGCCTGGAGCAGAAGCCCAGGAAGGTGGGGGTGTTTCTGGACTacgtggagggccgagtgtcctTCTACTGCGCGGAGACTGGGGTTCACATCCATACGTTTACAGATGGCTTCACTGATAGACTACATCCACTCTTTAGTCCTGGGAGGCAACATGGGGGCAGGAATATCGCTCCTCTGACTATTTGTACTACCTTCTGTAGCATCTGAGCCCCCTGACTTAACCCCCACGCCTGGAATAGTCATTTAATCATGTCATTATGTAGCCTAATGTAGAATAAGGCTCACTCGGTCCTCTCTCACGTCTGCATTTTCAGTTGGATAAACCGGCttctttcctaatattgagttaatgcagtgtctgtgttATCAGGCAATGAGCTGGGTAATCAATAGTAATgctataatttattttaattatAATTTATGACAGTATATATGAAccctcaaatgtattttttttacaaagtgTTGACTTTTTTTAAAATTCTGTGCATCATTAAAAAATCTGTAAATTA
>XM_036939471.1
AGCCACCACATAGTCTCATCCACAGGCTCAACTGATACAGTACAGAGAGACAGCGCAGGCTAGTGGACGAGACTAGCTACTACagggctagctctggtccagggtgttagtgaACCTTCAGGAAGGCTCAGCGTTAGCAAGCCACACTAacacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctgtttgacagctctaacaccctggaccagagctactgCAGGGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctaataCAGGGCCTGGTGCTGCtgtttgacagctctaacaccctggaccagagctgtttgacagctctaacaccctggaccagagctaatgCAGGGCCCGGTGCTGCtgtttgacagctctaacaccctggaccagagctaatgCAGGGCCCGGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGGGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGGGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctaatgCAGGGCCCGGTGCTGCtgtttgacagctctaacaccctggaccagagctgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCTGTTTGTCAGctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGAGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGGGCCCAGTGCTGCtgtttgacagctctaacaccctggaccagagctactgCAGGGCCCAGTGCTGCTGTTTGTCAGCTCTAACAGGGTGGGGCCTTACCTAAGATTTGCCCCTTCTCCAAGTGTGCACTTGTTAACTTCACTTTTAATTATTTTAAATTAATATAGGAAATACAGAAACTTCCTCTAGCCTATAGTCCATGGCTCCACCAATCAAATGCTTTTAAGTTTGTGGGGAGTGGtgaagtgcacacttcaggaggaaggagagataattgggacgTAGCCAATGTCTAAGGTTACAGACTCCTCCCAAAGCAAACGCCTGATTGACTGACAACAGCTGAACACACCTGGATTAAACCCCACCCACAAGCACCTTTCTAGGAACTCACACCTGTCACCTGGTCTCTGAATACAGGAAGAGACACAGACTGACTAGCGACCGAAGCTCTGAGCACCTGGCCAGGAACAAGTGGGACAGGGCATGgcatctaccatctctaccatcagcCTCGTCTCCGAGAGGCACTTCCTGTGCCCGCTGTGTAAGGACATCTTCAGCAGTCCTGTGACTACTCCGTGTGGCCACAGTTTCTGTCAGGACTGCCTGTGTGGGTACTGGACCCGGCACCGTTCAGACTACTGTCCCCTCTGCAAGAGGTTGTTCCATTCCAGGCCAGACCTTAGTATCAACCGCATCCTGGCTGACGTCTGTGACAACTACAGGAAGACACGGCCTGAGAGCCCTGAGGAGAGCCACGACACGCCACAGGTTGTAGACATTGACCAGATGATCCAGGAGCGACTGAAGAAAGTTGACAGACTCAGACACTCCCTGCAGCTCCTCAAAAACTCGTGTGTGAGGGAGGTGCGTGAGAGCCAGAAGGTGTTCTCTGCCCTTGTCAGTTCCATGGAGAAGAGCCACAAGGCCGTGGTGGCAGCCattgaggagagacagggggaggaggagAGGATTGTTGAGAAGCTGGTGAAGGAGCTGGAACAGGAGATTCTACAGCTGAGGAATGGAGACATTGACCTGGGGCCTTGTCATTCTCAGCAGAGCAATGATGAgctctgtggtggtggtggtggtcagaAGAGTGTTGCAGTGAGCACCACTTCCACCACGGGCTACTCTGAGAGGAGGGACTGGTCCAAGGTTTCCATGGAGACAGACCCCTGTATGGGCGTGACCAGGAGAGCAGTGTCAGACCTGATGGACGTGGTTAAAGGAGAGCTCCGTAGACTCTCTAAAGCTGAGCTgaagaaaatacagaaatacacagTAGACATCTCCCTGAGTCCCAAGACGGCCCACGCCTTCCTCTCGGTCTCAGACGACCGGAAACAGGTgcgacacacagacaaacaccagGAGGTCCCAGACAACCCCAAGAGGTTTGACCGCGTGGCCAACATCCTGGGAAGAGAATCCTTCAGCAGCGGCAGgtactactgggaggtggaggtgggagagaAGATTGAGTGGAACCTGGGCGTGGCCAGACAGTCCATCAACAGGAAAGGGAAGTTTACAGTCAGCCCAGCCAATGGCTTCTGGACACTGAGCCTAAAGAGCGGGGGTCAATACGTAGCTAACACCTCCCCCACTGTCACCCCCTTGGGCCTGGAGCAGAAGCCCAGGAAGGTGGGGGTGTTTCTGGACTacgtggagggccgagtgtcctTCTACTGCGCGGAGACTGGGGTTCACATCCATACGTTTACAGATGGCTTCACTGATAGACTACATCCACTCTTTAGTCCTGGGAGGCAACATGGGGGCAGGAATATCGCTCCTCTGACTATTTGTACTACCTTCTGTAGCATCTGAGCCCCCTGACTTAACCCCCACGCCTGGAATAGTCATTTAATCATGTCATTATGTAGCCTAATGTAGAATAAGGCTCACTCGGTCCTCTCTCACGTCTGCATTTTCAGTTGGATAAACCGGCttctttcctaatattgagttaatgcagtgtctgtgttATCAGGCAATGAGCTGGGTAATCAATAGTAATgctataatttattttaattatAATTTATGACAGTATATATGAAccctcaaatgtattttttttacaaagtgTTGACTTTTTTTAAAATTCTGTGCATCATTAAAAAATCTGTAAATTA

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939468.1 False 1917 mRNA 0.49 10 99028168 99036661
XM_036939469.1 False 1915 mRNA 0.49 10 99028168 99036662
XM_036939470.1 False 1891 mRNA 0.49 9 99028168 99036662
XM_036939471.1 True 3319 mRNA 0.53 10 99028168 99040834

Neighbor

gene id symbol gene type direction distance location
LOC110538838 LOC105029615 coding downstream 2780 99021958 ~ 99027957 (-)
LOC110539185 hgs coding downstream 8535 98981732 ~ 99019633 (-)
LOC110514497 LOC106602019 coding downstream 121725 98766105 ~ 98906443 (-)
LOC110487126 LOC106602016 coding downstream 456654 98566396 ~ 98571514 (-)
LOC110485331 ppl coding downstream 647256 98333131 ~ 98380912 (-)
LOC110538834 LOC106601838 coding upstream 1185 99042019 ~ 99045620 (-)
LOC118937838 LOC106606233 coding upstream 12450 99052890 ~ 99059256 (-)
LOC110538840 LOC106601903 coding upstream 49787 99090621 ~ 99092245 (-)
LOC110538845 LOC106606260 coding upstream 137252 99178086 ~ 99183106 (-)
LOC110517411 LOC106602071 coding upstream 177780 99218614 ~ 99231888 (-)
G1132303 NA non-coding downstream 7859 98979666 ~ 99020309 (-)
G1132330 NA non-coding downstream 15252 99011586 ~ 99012916 (-)
G1132319 NA non-coding downstream 34286 98993358 ~ 98993882 (-)
G1132342 NA non-coding upstream 5584 99046418 ~ 99047786 (-)
G1132340 NA non-coding upstream 7453 99048287 ~ 99051795 (-)
G1132349 NA non-coding upstream 20888 99061722 ~ 99061936 (-)
G1132350 NA non-coding upstream 22302 99063136 ~ 99063422 (-)
G1132328 NA other downstream 18056 99006627 ~ 99010112 (-)
G1131863 NA other downstream 644353 98382970 ~ 98383815 (-)
LOC118936513 cog1 other downstream 768481 98230363 ~ 98259687 (-)
LOC110485313 LOC106535622 other downstream 1053448 97959753 ~ 97974748 (-)
G1131666 NA other downstream 1167650 97857599 ~ 97860518 (-)
G1132564 NA other upstream 125114 99165948 ~ 99166607 (-)
G1132569 LOC106606209 other upstream 132831 99173665 ~ 99177478 (-)

Expression


Co-expression Network