LOC118937838 (LOC106606233)


Basic Information

Item Value
gene id LOC118937838
gene name LOC106606233
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99052890 ~ 99059256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939569.1
ATGGACAGTCACAACCACAGCCACAGGAGGCAGGAGGCTCAGTCCACTGACATGGAGTTGAGGATCCTGGTGGTGGGGTCCAGTGGACCGTCTCAGTTCTCCCTGACCAACTCTATCCTGGGGAGGGAGGAGTTCTCCAAGGAAGTCACCAGCATCGTCCAGAGCAGGAAGAACCTGGGGGACCTGGCCGGGACGCGTGTTGCTGTGGTCAACGGACCCAACCTCTACGGGAAGCACCTGTCCCGCACCAAGATGAAGACAGAGATGAAGAGGTGTAAGTGTCTGTCAGCCCCCGGCCCTCACGCTCTGCTCATGGCCTTTGACCTGGAGCAGATCTGCCCCAACGACGTCAAGACGCCCAAGCTGATGGTGAAGCGTTTCGGTGAAGACGCACTTTCCCACACCATAGTCCTCCTGGCCTACGAGGGGGACGTGGACATTCTGGCCCTGGAGAACCGGGTCAGCACCGACTGGCACCTCCGGGAGCTCGTCGAGCAGTGCGGCGGGCGCTACCACGTCTTCAACAAGAACTGGAGGGACCGTTCTCGAGACAAGGAGCTCCTCCAGAAGATTGAACGGATGCTGGCGACCCTGGGCGGGCAGCACTACACCAGCCGCTCTTACGGGCAGGCGGAGGAGAGCgtgaggaaggaagagaggaagctGCTGAAGAAGAGGGCGGCGGAGACGGAGGAGGCGTGGAGGGAGCTGGAGCAGCAGTACCGCGGGGAGGCGCTGCGCTGGCAGATGGAAGCCTACAACAACAGCGTGGGAGCAGAGATCAGGGCTAAAGCCGAGATGGACAACGGATGGTTGAGGACGTCGCTCGCCGTAGGGGCGGGGTTGGGGCTGGCCGCGGGGGCCGCCATGGGGATGGCGATGGGGGCGGTGGCGGGGGCGATGGGGATGACGATGGGAGGGGCTTTCGGAGGGTTGATGGGCGGCTCGGCGGGTGGGACGGCCCAGGTAGCGATAGAACACCTGGAGGACAGAGTGGGACCACACGCTACTAACTTCAACACTGTTTTCATCAACCGCTTCTTCAGACCACCACGTTCATGA
>TU1288930
TGACGATGGGAGGGGCTTTCGGAGGGTTGATGGGCGGCTCGGCGGGTGGGACGGCCCAGGTAGCGATAGAACACCTGGAGGACAGAGTGGGACCACACGCTACTAACTTCAACACTGTTTTCATCAACCGCTTCTTCAGACCACCACGTTCATGACATGGAGGAAGTGTTAATGACTGGAACCTGGACACAtacataggtagtagttactggaacctggacaaatacataggtagtagttactggaaccaggacaaatacataggtagtagttactggaaccaggacataggtagtagttactggaacctggacaaatacataggtagtagttactggaACCTGGACAAATACATAGGTAGTGGTTACTGGAACCTGGACAAAtacataggtagtagttactggaacctggacataggtagtagttactggaaccaggacataggtagtagttactggaaccaggacaaatacataggtagtagttactggaaccaggacataggtagtagttactggaacctggacaaatacataggtagtagttact
>TU1288947
agagaggtactgtgCAGTATAGTATCAGTGGGTTCTACAGCCAGAGATCCAGTAGTCATCGTGGAAGGCTGGACACCAGAGCCCCGCTAGAGTGGATTTGTGCAGCAGTGTAGGAGTTTAGCTGTGAAGGAGTTTAGCTGTGAAGGAGTTTAGTCGTGTATCTGTGAAGGAGTTTAGCCGTGAAGGAGTTTAGCCGTGTAGCTGTGAAGGAGTGCTGGAGGGAGTGCATCTCTGCAGAGCTACAACCTGGCCTGTGGAAGAGCTGTCCTGgagtgtttctctgtctgcaccaTTAACAGCCTGGGAGAGATGGACAGTCACAACCACAGCCACAGGAGGCAGGAGGTCCACTGACATGGAGTTGAGGATCCTGGTGGTGGGGTCCAGTGGACCGTCTCAGTTCTCCCTGACCAACTCTATCCTGGGGAGGGAGGAGTTCTCCAAGGAAGTCACCAGCATCGTCCAGAGCAGGAAGAACCTGGGGGACCTGGCCGGGACGCGTGTTGCTGTGGTCAACGGACCCAACCTCTACGGGAAGCACCTGTCCCGCACCAAGATGAAGACAGAGATGAAGAGGTGTAAGTGTCTGTCAGCCCCCGGCCCTCACGCTCTGCTCATGGCCTTTGACCTGGAGCAGATCTGCCCCAACGACGTCAAGACGCCCAAGCTGATGGTGAAGCGTTTCGGTGAAGACGCACTTTCCCACACCATAGTCCTCCTGGCCTACGAGGGGGACGTGGACATTCTGGCCCTGGAGAACCGGGTCAGCACCGACTGGCACCTCCGGGAGCTCGTCGAGCAGTGCGGCGGGCGCTACCACGTCTTCAACAAGAACTGGAGGGACCGTTCTCGAGACAAGGAGCTCCTCCAGAAGATTGAACGGATGCTGGCGACCCTGGGCGGGCAGCACTACACCAGCCGCTCTTACGGGCAGGCGGAGGAGAGCgtgaggaaggaagagaggaagctGCTGAAGAAGAGGGCGGCGGAGACGGAGGAGGCGTGGAGGGAGCTGGAGCAGCAGTACCGCGGGGAGGCGCTGCGCTGGCAGATGGAAGCCTACAACAACAGCGTGGGAGCAGAGATCAGGGCTAAAGCCGAGATGGACAACGGATGGTTGAGGACGTCGCTCGCCGTAGGGGCGGG

Function

NR:

description
PREDICTED: GTPase IMAP family member 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939569.1 False 1062 mRNA 0.62 3 99053284 99058841
TU1288930 False 549 lncRNA 0.46 1 99052890 99053438
TU1288947 True 1146 TUCP 0.59 4 99053504 99059256

Neighbor

gene id symbol gene type direction distance location
LOC110538834 LOC106601838 coding downstream 7664 99042019 ~ 99045620 (-)
btr02 LOC106606318 coding downstream 12450 99028168 ~ 99040834 (-)
LOC110538838 LOC105029615 coding downstream 27896 99021958 ~ 99027957 (-)
LOC110539185 hgs coding downstream 33651 98981732 ~ 99019633 (-)
LOC110514497 LOC106602019 coding downstream 146841 98766105 ~ 98906443 (-)
LOC110538840 LOC106601903 coding upstream 31780 99090621 ~ 99092245 (-)
LOC110538845 LOC106606260 coding upstream 119245 99178086 ~ 99183106 (-)
LOC110517411 LOC106602071 coding upstream 159773 99218614 ~ 99231888 (-)
LOC110538879 metrnl coding upstream 292688 99351529 ~ 99380971 (-)
LOC110538877 atp5h coding upstream 480467 99539308 ~ 99556315 (-)
G1132340 NA non-coding downstream 1489 99048287 ~ 99051795 (-)
G1132342 NA non-coding downstream 5498 99046418 ~ 99047786 (-)
G1132339 NA non-coding downstream 19746 99033293 ~ 99033538 (-)
G1132330 NA non-coding downstream 40368 99011586 ~ 99012916 (-)
G1132349 NA non-coding upstream 2881 99061722 ~ 99061936 (-)
G1132350 NA non-coding upstream 4295 99063136 ~ 99063422 (-)
G1132356 NA non-coding upstream 8489 99067330 ~ 99067532 (-)
G1132357 NA non-coding upstream 8981 99067822 ~ 99068110 (-)
G1132375 NA non-coding upstream 15669 99074510 ~ 99074721 (-)
G1132328 NA other downstream 43172 99006627 ~ 99010112 (-)
G1131863 NA other downstream 669469 98382970 ~ 98383815 (-)
LOC118936513 cog1 other downstream 793597 98230363 ~ 98259687 (-)
LOC110485313 LOC106535622 other downstream 1078564 97959753 ~ 97974748 (-)
G1131666 NA other downstream 1192766 97857599 ~ 97860518 (-)
G1132564 NA other upstream 107107 99165948 ~ 99166607 (-)
G1132569 LOC106606209 other upstream 114824 99173665 ~ 99177478 (-)
G1132625 NA other upstream 267671 99326512 ~ 99326924 (-)
LOC118937838 LOC106606233 other upstream 66 99052890 ~ 99059256 (-)

Expression


Co-expression Network