LOC110539183 (LOC106606365)


Basic Information

Item Value
gene id LOC110539183
gene name LOC106606365
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99070996 ~ 99088300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939475.1
ACGGAAATCGttttgttgtcttcctgtttCTAGATGTGTGTCGCGGTATGAAGTTGATCGCATGCTATTGCACGGTCTATGGACAGTAACAGTTTAGCTACATTGTGTCATGTCATGATTATGCCCGCGGTAAATCACGGATCGCTACATCGACGTGGTGTTACATTGTTACTAAAAAACCGGACTTGCGCGTGGTTGGTGCTACAGTTCAAAGGCAACCAACTCACGAGGTAACGTTACTGTACAGTAGTGCAACAACTTGAAATGATTGTCTGACATTCGCTCACATATTGAGTGAAAGGATGCTGAGAACATGTTTAACAGCTGTCCGCGGTCCTGCGGTCTGCGTGGGTCGGTGTTTCAGCAGTGAAGTGAGTGGTGGAGATTCCACGTTACCCGGTTTCTCCTCTCCACCGTTCTCAACGGAGGCTTCACTCTATGTTCACTGGCCTTACTGTCTGAAGAGATGCTCCTACTGTAACTTCAACAAGTACATCCCTCGCTCTGACAACCAGGATGTCATGTTGGAGTGTCTCCAGCGGGAGACGGAGACCTTACTAAAGCTCAGCCAGGTGTCCCGGATCACCTCTGTGTTTTTTGGAGGCGGGACTCCCAGCCTGGCCCGCCCCTCCACTATCGCTGCGGTCCTAGAGACGGTTGCCAGGCACGCTGGACTATCAGAGGAGGCGGAGGTCACTCTGGAGGTCAACCCCACCCCCATAGGAAGCTCTAAGTTGGAGGACTTCCTCCATGCTGGCGTCAACCGTTTTTCCATCGGGGTGCAGTCTCTCCGGGACGACGACCTGAAGGTTCTGGGGAGAGACCATAACTCCCAGCATGCTTTGCAGACCGTAGCGGAGGCTCGGAGGCTCTGCCCGGGGAGGGTGTCTGTCGACGTCATGTTCGGACGCCCTGGTCAGAGCGTTGCATCCTGGGAGTTGGAGTTGGATGAGCTGCTGTCGGTGTGTGATGACCACGTCTCCCTGTACCAGCTGACCCTGGAGAGAGGCACACAGCTGTTCAGACAGGTCCAGAAAGGCCAACTGAGCGTGcccagtgatgacatcacagctgTCATGTATGACTCTGCCAGGAGGATTCTTCAGAAGAGAGGCTATCTGCAGTACGAGGTGTCCAACTTTGCCAGAAATgaTGCCATCAGCCAACACAATATGAGCTACTGGAAGGCCAGTCAGTACCTTGGAGTGGGCCCAGGTGCCCATGGTCGCTTCGTCCCCcgtggagagggggatgtgtgtcGAGAGGCCCGTACCCAGACTCTGGAGCCTGATGTCTGGTTGAGAGAGGTGCAGCAGAGGAGTCACGGGACTCGACGCAGGATACCCCTCACCCACCTGGCACTATTGGAGGAAGTGTTGGTCATGGGACTGCGTTTGATTGACGGCATCACTCACCAGCATTGGCAGTTGTTCAGTCCCAGGGCAGATCTGTACCAGATTCTCAGCTCATCCTCTGAAGTACAAGACCTTCAACAGACAGGCCTCCTAATTCTGGATGACAGGGGTCTGCGGTGCTCGTGGCAGGGCCTGGCCTTACTGGACAGCATGTTACCCACTCTGCTGTTGCTGCTGGAGGCCTACATCACCCAGGGGCTCCAGGAGCAGCAGGCCAGGGGCCCCATAGGAGAccagagacatggaggacagaggGTCTCCAAGCCTggctgacagacaggggagatTGACCCAGAGACTGAGCCCGAGACTGACCCGGAGCCCGAGACTGACCCGGAGCCCGAGACTGACCCGGAGCCCGAGACTGACCCGGAGACCGAGACTGACCCGGAGACCGACACTGAGCCCGAGACTGACCCGGAGCCCGAGACTGACCCGGAGCCCGAGACTGACCCGGAGCCCGAGACTGACCCGGAGCCCGAGACTGACCCGGAGACTGAGCCTGACCCGGAGACTGAGCCTGACCCGGAGACTGAGACTGACACTGAGACTGAGCCGGAGACTGAGCCGGAGACTACCCCGGCAGCCACTATGAACTGTAGCTACTGGTCTAATCGACCATCTACACTGATGAAGTAGATTAGCTGCAGTAAGATGACGCTAACCTGCTGTCACCGTGTTCTGATCAGTGACAGGTTAGATGGGCCTGAGATGCTGATAAAGCTCTGTACTTTACAGTTTAACAGGATGCTGTCGGGACTCTGATAAAGCTCTGTACTTTACAGTTTAACAGGATGCTGTTGGGACTCTGATAAAGCTCTGTACTTTACAGTTTAACAGGATGCTGTTGGGACTCTGATAAAGCTCTGTACTTTACAGTTTAACAGGATGCTGTTGGGACTCGGGAAAGGTTCTCCACACCATGTCTTCTATGAACAAATCATTCTGTACCCTTCAATGTAGTAGAGggaatctctctctcacacacacatactcaaacacacactcactcacacacacacactcacacacactcacacacactcacacacactcacactcacactcacactcacacacacacagtcacacacacactcacacacacacactctcactcacacacagacacacacacacacacacgacaagcAGTTACCAAAAGCAGCAGTTAAATAGGTTGTTTATGAAGGTTAGCGTGCCACGGACTCCAGTTCCTCCACGCTTCTCTAGTTGTCTGTCATCAGAGCTGTAGTGAACCACTGTTATTGTCGAGGTCCCTGGAATGGAGCTCTGCTTCCCCATCATCATAGCGTGAGAAGATGTAGCATGAGCAGGGGGCTGGATcacctggcagagagagagagagagagagggtgggtgggtgtgtgtgtgtatgtttgggcAGAGtgatagtgagtgtgtgtgtttgggcagAGTGACGTGGTCGTGGTCCCTGTATCTGGCCCAGGTGCAGAGCAGATCCCAGATTAGACAGACGGGCTTAAACCTTCTGTTGTCCATCAGCTGTGATGAAAGTCTTGGTCTGACAGGTACACAACATGTAATGCACCAAGAAGAGTCTGGAGCGTGTTGTTTTAAGCATGAAGACAGCATCACAACACTGTAGACTGGAGCGTATTGTGTTTAAGCCTGAAGACAGCATCACAACACTGTAGACTGGAGCGTGTTGTTTAAGCCTGAAGACAACACTGTAGACTGGAGCGTATTGTTTAAGCATGAAGACAGCATCACAACACTGTAGACTGGAGCGTATTGTTTAAGCCTGAAGACAACACTGTAGACTGGAGCGTATTGTTTAAGCCTGAAGACAGCATCACAACACTGTAGACTGGAGCGTATTGTTTAAGCCTGAAGACAGCATCACAACACTGTAGACTGGAGCGTATTGTTTAAGCCTGAAGACAGCATCACAACACTGTAGACTGGAGCGTATTGTTTAAGCCTGATGACAGCATCACAACACTGTAGACTGGAGCGTATTGTTTAAGCCTGATGACAGCATCACAACACTGTAGTCTGGAGCGTATTGTTTAAGCCTGATGACAGCATCACAACACTGTAGACCGGAGCGTATTGTGGAGGCTTGTTGAGATGGGTCTGTTGACACGCTGGGTGTATTGTAGGTATAGTGTACATGGGTTAATAAGAAGAGCACATTTTATAATAGGATAATTATAACCGATTGCCAAGTAAGATGGACTGTGAAATGCATAGTTGGTTCAATTTCTTACTCAATACAAATGCTTTCTACTATTCATTCTGATATTTATGGTCATTCATGCTCATTAAAGAAATGGTGTACATTCCCTATAAATGtaactacttttgacctgagccctgACCTGAGCCCTTTGACccctgacctgagccctatgaccCCTGGCCTGAGCCCTATTAGCCCTGACCTGAGCCCTTTGACccctgacctgagccctatta
>TU1288971
AGTTGATCGCATGCTATTGCACGGTCTATGGACAGTAACAGTTTAGCTACATTGTGTCATGTCATGATTATGCCCGCGGTAAATCACGGATCGCTACATCGACGTGGTGTTACATTGTTACTAAAAAACCGGACTTGCGCGTGGTTGGTGCTACAGTTCAAAGGCAACCAACTCACGAGGTAACGTTACTGTACAGTAGTGCAACAACTTGAAATGATTGTCTGACATTCGCTCACATATTGAGTGAAAGGATGCTGAGAACATGTTTAACAGCTGTCCGCGGTCCTGCGGTCTGCGTGGGTCGGTGTTTCAGCAGTGAAGTGAGTGGTGGAGATTCCACGTTACCCGGTTTCTCCTCTCCACCGTTCTCAACGGAGGCTTCACTCTATGTTCACTGGCCTTACTGTCTGAAGAGATGCTCCTACTGTAACTTCAACAAGTACATCCCTCGCTCTGACAACCAGGATGTCATGTTGGAGTGTCTCCAGCGGGAGACGGAGACCTTACTAAAGCTCAGCCAGGTGTCCCGGTAGGTTTACCGTCTAAATTCAACCCTTCCTCTGTGGGTCATCGCCTTTAGCTTTAGTGTCTCCATGGGAACATctgaaatggcacactattccctaaaCAGTGCACTATTTCCAGAGTGCCTGAGGCTGACTATGGAGGGAACAGGGGGCCATTTTCAGACTGCTCCTCCACCTCCTGGAGTTCAACTCAAGGCTGACTATGGAGGGAACAGGGGGCCATTTTCAGACTGCTCCTCCCCCTCCTGGAGTTCAACTCAAGGCTGACTATGGAGGGAACAGGGGGCCATTTTCAGACTGCTCCTCCACCCCCTGGAGTTCAACTCAAGGCTGACTATGGAGGGAACAGGGGGCCATTTTCAGACTGCTCCTCCACCTCCTGGAGTTCAACTCAAGGCTGACTATGGAGGGAACAGGGGGCCATTTTCAGACTGCTCCTCCACCTCCTGGAGTTCAACTCAAGGCtgactatagagggaacagggggcCATTTTCAGACCGCTCCTCCACCTCCTGGAGTTCAACTCAAGGCTGACTATGGAGGGAACAGGGGGCCATTTTCAGACCGCTCCTCCACCTCCTGGAGTTCAACTCAAGGCTGACTATGGAGGGAACAGGGGGC
>TU1288966
CCCAGCATGCTTTGCAGACCGTAGCGGAGGCTCGGAGGCTCTGCCCGGGGAGGGTGTCTGTCGACGTCATGTTCGGACGCCCTGGTCAGAGCGTTGCATCCTGGGAGTTGGAGTTGGATGAGCTGCTGTCGGTGTGTGATGACCACGTCTCCCTGTACCAGCTGACCCTGGAGAGAGGCACACAGCTGTTCAGACAGGTCCAGAAAGGCCAACTGAGCGTGcccagtgatgacatcacagctgTCATGTATGACTCTGCCAGGAGGATTCTTCAGAAGAGAGGCTATCTGCAGTACGAGGTGTCCAACTTTGCCAGAAATgaTGCCATCAGCCAACACAATATGAGCTACTGGAAGGCCAGTCAGTACCTTGGAGTGGGCCCAGGTGCCCATGGTCGCTTCGTCCCCcgtggagagggggatgtgtgtcGAGAGGCCCGTACCCAGACTCTGGAGCCTGATGTCTGGTTGAGAGAGGTGCAGCAGAGGAGTCACGGGACTCGACGCAGGATACCCCTCACCCACCTGGCACTATTGGAGGAAGTGTTGGTCATGGGACTGCGTTTGATTGACGGCATCACTCACCAGCATTGGCAGTTGTTCAGTCCCAGGGCAGATCTGTACCAGATTCTCAGCTCATCCTCTGAAGTACAAGACCTTCAACAGACAGGCCT
>TU1288969
TACTGGTCTAATCGACCATCTACACTGATGAAGTAGATTAGCTGCAGTAAGATGACGCTAACCTGCTGTCACCGTGTTCTGATCAGTGACAGGTTAGATGGGCCTGAGATGCTGATAAAGCTCTGTACTTTACAGTTTAACAGGATGCTGTCGGGACTCGGGAAAGGTTCTCCACACCATGTCTTCTATGAACAAATCATTCT
>TU1288965
gggcagAGTGACGTGGTCGTGGTCCCTGTATCTGGCCCAGGTGCAGAGCAGATCCCAGATTAGACAGACGGGCTTAAACCTTCTGTTGTCCATCAGCTGTGATGAAAGTCTTGGTCTGACAGGTACACAACATGTAATGCACCAAGAAGAGTCTGGAGCGTGTTGTTTTAAGCATGAAGACAGCATCACAACACTGTAGACTGGAGCGTATTGTGTTTAAGCCTGAAGACAGCATCACAACACTGTAGACTGGAGCGTGTTGTTTTAAGCCTGATGACAGCATCACAACACTGTAGTCTGGAGCGTATTGTTTAAGCCTGATGACAGCATCACAACACTGTAGACCGGAGCGTATTGTGGAGGCTTGTTGAGATGGGTCTGTTGACACGCTGGGTGTATTGTAGGTATAGTGTACATGGGTTAATAAGAAGAGCACATTTTATAATAGGATAATTATAACCGATTGCCAAGTAAGATGGACTGTGAAATGCATAGTTGGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939475.1 False 3878 mRNA 0.52 10 99070996 99088300
TU1288971 False 1149 TUCP 0.52 2 99071047 99073632
TU1288966 False 673 TUCP 0.57 6 99078110 99083884
TU1288969 False 203 lncRNA 0.45 2 99086441 99086784
TU1288965 True 501 lncRNA 0.46 2 99087269 99088081

Neighbor

gene id symbol gene type direction distance location
LOC110516605 LOC106592968 coding upstream 93750 98976333 ~ 98977246 (+)
LOC110487124 LOC105006040 coding upstream 506757 98425760 ~ 98564239 (+)
LOC118936514 smim22 coding upstream 804969 98259570 ~ 98268855 (+)
LOC110516721 LOC105012791 coding upstream 852711 98187732 ~ 98218285 (+)
LOC118937837 LOC106594247 coding upstream 948918 98101643 ~ 98122078 (+)
epn3a LOC105006167 coding downstream 29101 99117401 ~ 99175955 (+)
LOC110538843 LOC106601911 coding downstream 94817 99183117 ~ 99188055 (+)
LOC110538844 tbcd coding downstream 100585 99188885 ~ 99322871 (+)
LOC110485297 LOC106592354 coding downstream 607306 99695572 ~ 99698337 (+)
LOC118937855 LOC106592355 coding downstream 619505 99707805 ~ 99709282 (+)
G1132355 NA non-coding upstream 3598 99067178 ~ 99067398 (+)
G1132351 NA non-coding upstream 6379 99064399 ~ 99064617 (+)
G1132214 NA non-coding upstream 20527 99049976 ~ 99050469 (+)
G1132211 NA non-coding upstream 22858 99047909 ~ 99048138 (+)
G1132206 NA non-coding upstream 29661 99040836 ~ 99041335 (+)
G1132365 NA non-coding downstream 537 99088837 ~ 99089338 (+)
G1132387 NA non-coding downstream 4528 99092828 ~ 99093044 (+)
G1132391 NA non-coding downstream 11429 99099729 ~ 99100040 (+)
G1132397 NA non-coding downstream 32507 99120807 ~ 99121009 (+)
G1132415 NA non-coding downstream 64008 99152308 ~ 99152731 (+)
G1132187 NA other upstream 69223 99001356 ~ 99001773 (+)
G1132174 NA other upstream 96070 98974443 ~ 98974926 (+)
G1132093 NA other upstream 273484 98795758 ~ 98797512 (+)
G1132082 NA other upstream 287669 98782139 ~ 98783327 (+)
G1132058 NA other upstream 303739 98762440 ~ 98767257 (+)
LOC110513175 LOC106603827 other downstream 716734 99805034 ~ 99817184 (+)
G1132887 NA other downstream 921463 100009763 ~ 100011513 (+)
G1132369 NA non-coding upstream 10091 99076123 ~ 99076350 (+)
G1132368 NA non-coding upstream 10609 99075443 ~ 99075832 (+)
G1132367 NA non-coding upstream 11706 99074515 ~ 99074735 (+)
LOC110539183 LOC106606365 other upstream 2557 99070996 ~ 99088300 (+)

Expression


Co-expression Network