LOC110538879 (metrnl)


Basic Information

Item Value
gene id LOC110538879
gene name metrnl
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99351529 ~ 99380971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939488.1
GAAATTCACTCACTGAACTTCCAGTAGAGGAATGCAAGTAGCCGCTGTCGGTTGTAGGTTACGATACGGTGGATGGTCCTTACTGAAATAACGCTTTTTTTTCACGGTTCTACTGGCTTTTACGGGAAGAAAAGAACATTCGAAGACATTTCAACAGGCGACCAGAACCGATGGGGACGTTATGTCGTTGGAGTTACGCGGGTGGATTTGGTTGTTTTAGTTGAGAAGAAGGAACGTGTTGCGCTCGGAGCAACAGCGGTGGGATTAAACATGCTGACACCGATTTTAGCATACTTGTTATCGGTCCTCCTGCTGTGTCGGATAGCGTTCTCTCAATACTCCAGCGATCAGTGTAGTTGGAAGGGCAGTGGTCTGACCCATGAGGGCCACAGCCGTGATGTGGAGCAGGTCTACCTACGTTGTTCCCAGGGTTCCCTCCACTGGCTCTACCCTACAGGGGCCGTCATCGTCAACCTGCGGCCCAACACCCTGTCCCCGGCAGCCGCCCGTCTCTCCGTCTGCATCAAGCCCTCTAGGGACTCCCACGGGGCCAACATCTACCTGGACCGGGCCGGGAAGCTGCGCCTGCTGCTGAGGGAGCAGGACCAGGCCCAGGGGAAGGTGACCTGCTTCAGCATCCAGGAGGGGTCTCTGTTCATAGAGGCCATACCTCACAGAGACATCAGTAAGAGAATCACCTCGTTCCAGTATGAGCTGGTTACAGAGAGGACCGGGGCTGGAGCTGTAGCCTTGGCTGGGGTGGAGCCACAAGCACTGTCTGctccCTGTCAGCCCTGCAGTGATGCTGAGGTGCTGTTAGCAGTCTGCACCAGTGACTTTGtGGGGAGGGGCACCATCCAGGGGGTGGAGCAGGAGGCGGAGCAGTTGTCGGTCACCGTGGCGATAAGCCGCCTGTACAGACAGAAGACTCAGGTGTTTGTGTCAGGGGGGGTGAGAGTGAGGAGGTGGACAGGCAGGGTGAGGATGCCCAGGCAGTGTGGGGTCAGGCCCGGCCCGGGGAAGGGGGATGGAGACTTCCTGTTCACGGGGAGCGTAAGGTTCGGGGAGGCCTGGATGGGCTGTGCCCCGAGATACAAGGACTTCCTCAGACTGTACcaggaggcagagcagagtgggaCTAACCCCTGTCATGTGGACACAGACTGAGTGTCAGGGAGCTACCTGGCCACACCCACAACAACAGGCCTCTTCCTGAATGGACAGCAGACCCGGGTCTGAGCCGAATGTGGACACTAACTGAGAGgggtgcagacagacagacaaatggacagacagactggcccagacacacagacaccttcTGATCCTACTGTCTTCCTGCTCTGGAGCTCCTGAATGTTGCCAAGCAGCATTGCGACTGTTGGACTCATTTCTCAAAGCcaacgttgttgttgttgtggaatgTTCTAAAGCTGTTCCGGAATGTTCTAGACCATTCTGGAATGTTGTAAAACTGTTCCATTGGAATGTTCTCAGACTTCATTCTCTGAGACGTACATCAACAGTCAGACGATGTGAGGTTTCTAATGTAACAGAAACCTCTCTGGACCTGATGTGTAGAAGATGTGAACCAGGAACATTTCTGAAACGGAGGATCCAACTGCTTTGTGAAAAGCTTCATGTACAGTTTTGAAGATGTTTCTTATGAAAGAAATGTATACATTAAAAACCTGATTTTTTATTTGTGATTAATTTTGTTTTTATGGAGATGTAGAAGTGCATTTTACAGTCTTTATTATGTCCTCAGGCTGTTGAATTATAAACCCCCTTTTTGTGTGATTAAAAGTTGTATTCCTT
>TU1289325
GCCCGGGGAAGGGGGATGGAGACTTCCTGTTCACGGGGAGCGTAAGGTTCGGGGAGGCCTGGATGGGCTGTGCCCCGAGATACAAGGACTTCCTCAGACTGTACcaggaggcagagcagagtgggaCTAACCCCTGTCATGTGGACACAGACTGAGTGTCAGGGAGCTACCTGGCCACACCCACAACAACAGGCCTCTTCCTGAATGGACAGCAGACCCGGGTCTGAGCCGAATGTGGACACTAACTGAGAGgggtgcagacagacagacagacacacagacaccttcTGATCCTACTGTCTTCCTGC

Function

symbol description
metrnl Predicted to enable hormone activity. Predicted to be involved in several processes, including brown fat cell differentiation; energy homeostasis; and positive regulation of brown fat cell differentiation. Located in extracellular exosome.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939488.1 False 1818 mRNA 0.52 4 99351529 99380971
TU1289325 True 308 lncRNA 0.58 2 99352005 99352334

Neighbor

gene id symbol gene type direction distance location
LOC110517411 LOC106602071 coding downstream 119641 99218614 ~ 99231888 (-)
LOC110538845 LOC106606260 coding downstream 168423 99178086 ~ 99183106 (-)
LOC110538840 LOC106601903 coding downstream 259284 99090621 ~ 99092245 (-)
LOC118937838 LOC106606233 coding downstream 292688 99052890 ~ 99059256 (-)
LOC110538834 LOC106601838 coding downstream 305909 99042019 ~ 99045620 (-)
LOC110538877 atp5h coding upstream 158337 99539308 ~ 99556315 (-)
LOC118937841 LOC106606276 coding upstream 182761 99563732 ~ 99631073 (-)
LOC118937859 LOC106606280 coding upstream 222780 99603751 ~ 99604658 (-)
LOC110485298 LOC106603827 coding upstream 258668 99639639 ~ 99672638 (-)
LOC110539068 LOC106583735 coding upstream 448459 99829430 ~ 100834884 (-)
G1132629 NA non-coding downstream 19113 99331848 ~ 99332416 (-)
G1132627 NA non-coding downstream 23443 99327849 ~ 99328086 (-)
G1132626 NA non-coding downstream 24109 99327189 ~ 99327420 (-)
G1132620 NA non-coding downstream 36925 99314250 ~ 99314604 (-)
G1132619 NA non-coding downstream 37935 99312399 ~ 99313594 (-)
G1132656 NA non-coding upstream 5617 99386588 ~ 99389346 (-)
G1132662 NA non-coding upstream 32968 99413939 ~ 99414972 (-)
G1132667 NA non-coding upstream 46350 99427321 ~ 99428796 (-)
G1132669 NA non-coding upstream 48973 99429944 ~ 99430707 (-)
G1132679 NA non-coding upstream 66819 99447790 ~ 99448616 (-)
G1132625 NA other downstream 24605 99326512 ~ 99326924 (-)
G1132569 LOC106606209 other downstream 175621 99173665 ~ 99177478 (-)
G1132564 NA other downstream 184922 99165948 ~ 99166607 (-)
G1133028 NA other upstream 543089 99924060 ~ 99925126 (-)
G1134054 NA other upstream 829486 100210457 ~ 100211148 (-)
LOC118937853 tmem114 other upstream 877683 100258230 ~ 100295591 (-)
G1134117 NA other upstream 1039986 100420957 ~ 100423066 (-)
G1132643 NA non-coding upstream 3923 99356257 ~ 99356681 (-)
G1132644 NA non-coding upstream 4843 99357177 ~ 99358063 (-)
G1132648 NA non-coding upstream 23723 99376057 ~ 99376707 (-)

Expression


Co-expression Network