LOC118937841 (LOC106606276)


Basic Information

Item Value
gene id LOC118937841
gene name LOC106606276
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99563732 ~ 99631073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939577.1
atgagtctctctggggagagagaggaggggggccctgctgaaatgagtctctctggggaacaTGACACCAAAGCTAAGAGCCCAATcaagcaggagagaccagcctcccttgtacccagctgtgtgtccatgaagagtgaccAGTCTATGGAACTACCTATAGAGTTTAGAGAGGGAGACTTTTCTACTGAACAAAGAAACCAACAGGAGAGATCAGAGTCAGAGATTCTCAGTGGTCAGTCTTCCCAGAGTCATCAAACAGACCTGGCCTCTATATTCAATTTGCTTGAAGAGAATATGATGACATTTGTGAAGAACGAGCTGAAGATGTTCAAGAGGATTCTTAGTCCAGAACTCCCAGAAGGCTTTGAGAGTCAGAAGCAGGATAAGGAAGTGGATGCTGAAGATGAGAAGCAGGAGAGCagtgccagagagggggctctgaagatcacactgcacgtcctgaggaaaatgaaccagaaggagcttgctgacacactggagaaaaATGAACTTGCTGTGATTTGCCAACGTGAACTCAAATCTAATCTAAAGAAGAAGTTTCAATGTGTATTTGAGGGGATCGCTAAACAaggaaacccaacacttctcaataagatctacacagagctctacatcacagagggtggaacaggagaggtcaataatgaacatgagttgagacagattgagacaacaaccaggaaacaAGCAAGACCAGAGACTGCAATCAAATGTAACGACATCTTCAAACCCTTAAGTGGACAAGACAAACTtatcagaactgtgctgacaaagggagtcgctggcattggaaaaacagtctctgtacagaagttcattctggactgggctgaaggaaaagcaaatcaggatgtccaatttgtattttcattcccttttcgggagctgaatttgatgaaagagATAAAACACACTTTGATTGAACTTCTCAATCACTTCTCAATGGAAATCAAAGAATCAAGAATCTCCAACTATGACAAGTAcaaagttctgttcatctttgatggtctggatgagtgccGACTGCCCCTAGACTTCCAGAACAACAAGATCTGTTGTGACGTCACAGagtcaacctcagtggatgttctgctgacaaatctcatgaagggaaatctgcttccctctgctctcctctggatcactacccgacctgcagcagccaataagatcccttcagagtgtgttgaccaggtgacagaggtacgaggtttcaatgacccacagaaggaggagtacttcaggaagagattccgtgatgaggacctggccagcagaatcatctcacacataaagacatcaaggagcctccacatcatgtgccacattccagtcttctgttggatttctgcaacagtccttgaagacatgctgaaacataagagagaagagatgcccaagactctgactgagatgtacaCACACCTTGTGGTGTTTCACACCAAAAAGAAGAATGAAAAGTATattgggaaagaagagagaggtcCAGACTGGAATAAAGAAAGCATTCTGTCACTGGGAAAACTGGCTTTTCAACAGCTTGTGAATGgcaatctgattttctatgaaGAAGACCTGAAAGAGGCTGGCATTGATGTCAATGAAGCCTCAGTGTACTCAGGATTGTGCACACAGATCTTCAAAGAGGATTGTGGGCTGTACCAGGACAAGGTGTACTGCTTCGTGcatctgagcattcaggagtttctggctgctgtatatgTGTTCCTTTCATTCAGCAACAACAATGAAAATCTAATGGCCGAACTGCAATCAACATCTAGTAACGATTGTCTACTGAAGCCAGAAGTTACTGTCTACAAGAGCGCTGTGGATGAAGCCTTACAAAGTGAGACGGGAAACCTGGACcttttcctccgcttccttctgggtctctcactggagtccaatcagaagcACTTACGAGGTCTACTGACAAAGACAAGAAGCAGCTCACAGAGCCATGAAGAAACAGTCAAGTACATCCAGGAGAAGATCAGGGACAGTCCATCTACAGAGAGGTGCATCAATttgttccactgtctgaatgaactgaatgaccattctctagtggaggagatccaaAGCTACCTGAGATCAGGAAGTGTCTCCAGTGATGAACTCTCACCTTcacagtggtcagctctggtctttgtgttgctgacttcagaaaaggagctggatgtgtttgacctgaagaaatactccagatcagaggaaggtcttCTGAGGCTGCTGCCAGTGGTCAAAGCCTCCAGAGCTGCTCTgctgtcaggctgtggagTCACGGAcaaaggctgtgcttctctggcctCAGCTCTgaagtcaaacccctcacacctgagagagctggacctgagtaacaatgacctgaaggattcaggagtgaagcttcTCTCTGatggactggggaatccccactgtaaactggagactctgaggctgtcaggctgtctagtcacTGAAGAAGGCTGTGCTTCCCTGGTCTCAGCTCTgaagtcaaacccctcacacctgagagaactggacctgagctacaatcacccaggagactcaggagtcagactgctctctgctggactggaggatccacactgcagactggagaaactcaaTGTGGAACATGGTGGAGAGTACACAATGAAGCCTGGACttagaaaatatgcctgtgatctcacactggacctaaacacagtaaacagactcctctctctgtctgaggagaacagaaaggtgacaCGTGGGAGAGAGGATCGGCCATATCCtaatcacccagagagatttgacTACAGGAAGcaggtgctgtgtagagagggtctgactgggtgctgttactgggaggtagagtggagtgggAGAAGGGCTGCTataggagtgacatataaaggaatcagcaggagaggagagggtgaggacaGTCTGATTGGATGGAATGACAAGTCCTGGAGTCTGGTCTGCTCTGACAACCTTTATACGGCCTGGCACAATAATAATACCACTCTCATAGACGTCCCCCCCTCCAGCtcccacagagtaggagtgtatctggactggccagccAGCACTCTGTCGTTCTACAGAgtctcctctgacacactgacccacctgtACACATATCACAccacattcactgagcccctctatccagggtttctggtttatgactcctcagtgtccctgtgtcacGAGGTCCCTGTGTCAAACACAACTTGAACCTGCTGACGTCATCTGAGCGCGTCTTA
>TU1289686
TGTGGATAAAGCCTTACAAAGTGAGACAGGAAACCTGGACcttttcctccgcttccttctgggtctctcactggagtccaatcagaagcACTTACGAGGTCTACTGACAAAGACAAGAAGCAGCTCACAGAGCCATGAAGAAACAGTCAAGTACATCCAGGAGAAGATCAGGGACAGTCCATCTACAGAGAGGTGCATCAATttgttccactgtctgaatgaactgaatgaccattctctagtggaggagatccaaAGCTACCTGAGATCAGGAAGTGTCTCCAGTGATGAACTCTCACCTTcacagtggtcagctctggtctttgtgttgctgacttcagaaaaggagctggatgtgtttgacctgaagaaatactccagatcagaggaaggtcttCTGAGGCTGCTGCCAGTGGTCAAAGCCTCCAGAGCTGCTCTgctgtcaggctgtggagTCACGGAcaaaggctgtgcttctctggcctCAGCTCTgaagtcaaacccctcacacctgagagagctggacctgagtaacaatgacctgaaggattcaggagtgaagcttcTCTCTGatggactggggaatccccactgtaaactggagactctgaggctgtcaggctgtctagtcacagaggaaggttgtgcttctctggtctcagctctgaagtcaaacccctcccacctgagagagctggatctgagtaacaatgacctgaaggattcaggagtgaagcttcTCTCTGatggactgggg

Function

NR:

description
NLR family CARD domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939577.1 False 3266 mRNA 0.47 9 99563732 99631073
TU1289686 True 757 lncRNA 0.50 4 99568778 99611462

Neighbor

gene id symbol gene type direction distance location
LOC110538877 atp5h coding downstream 7417 99539308 ~ 99556315 (-)
LOC110538879 metrnl coding downstream 182761 99351529 ~ 99380971 (-)
LOC110517411 LOC106602071 coding downstream 331844 99218614 ~ 99231888 (-)
LOC110538845 LOC106606260 coding downstream 380626 99178086 ~ 99183106 (-)
LOC110538840 LOC106601903 coding downstream 471487 99090621 ~ 99092245 (-)
LOC110485298 LOC106603827 coding upstream 8566 99639639 ~ 99672638 (-)
LOC110539068 LOC106583735 coding upstream 198357 99829430 ~ 100834884 (-)
LOC110538873 NA coding upstream 219083 99850156 ~ 99857256 (-)
LOC110539071 LOC106602020 coding upstream 315663 99946736 ~ 99965247 (-)
LOC118937866 NA coding upstream 335350 99966423 ~ 99968463 (-)
G1132733 NA non-coding downstream 3474 99560053 ~ 99560258 (-)
G1132732 NA non-coding downstream 4380 99559110 ~ 99559352 (-)
G1132728 NA non-coding downstream 10757 99549556 ~ 99552975 (-)
G1132716 NA non-coding downstream 25502 99536776 ~ 99538230 (-)
G1132713 NA non-coding downstream 31176 99532255 ~ 99532556 (-)
G1132929 NA non-coding upstream 13016 99644089 ~ 99644786 (-)
G1132901 NA non-coding upstream 25798 99656871 ~ 99752959 (-)
G1132941 NA non-coding upstream 62229 99693302 ~ 99693700 (-)
G1132948 NA non-coding upstream 73694 99704767 ~ 99705090 (-)
G1132949 NA non-coding upstream 74339 99705412 ~ 99706569 (-)
G1132625 NA other downstream 236808 99326512 ~ 99326924 (-)
G1132569 LOC106606209 other downstream 387824 99173665 ~ 99177478 (-)
G1132564 NA other downstream 397125 99165948 ~ 99166607 (-)
G1133028 NA other upstream 292987 99924060 ~ 99925126 (-)
G1134054 NA other upstream 579384 100210457 ~ 100211148 (-)
LOC118937853 tmem114 other upstream 627581 100258230 ~ 100295591 (-)
G1134117 NA other upstream 789884 100420957 ~ 100423066 (-)
G1132902 NA non-coding downstream 1916 99566329 ~ 99566862 (-)
G1132918 NA non-coding upstream 5206 99616668 ~ 99661202 (-)
G1132921 NA non-coding upstream 12344 99623806 ~ 99624613 (-)

Expression


Co-expression Network