LOC118937859 (LOC106606280)


Basic Information

Item Value
gene id LOC118937859
gene name LOC106606280
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99603751 ~ 99604658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939637.1
TGTGTCTGGTTTCATCCATCAGATGCCTGtgatctcacactggacccaaacacagcaaacagactcctctctctgtctgaggagaacagaaaggtgacatgtAGGACAGAGGAACAGCCGTACCCTAATCACTCAGAGAGATTTGAGGTCTGGCCacaggtgctgtgtagagagggtctgactgggcgctgttactgggaggtagagATGAGTGGGAGAGGTGCTGATATAGGAGTGACATATAATGGAATCAGAAGGAGAGGATTGGGTAATGACTGTGGGCTTGGATACAATGACAGGTCCTGGAGTCTGTTCTGCTATGACAACAGTTATAGAGCCTGGCATAATCACAATCTCACTATCATAGACGTCCCCGCCTCCAGCtcccacagagtaggagtgtatctggactggccagccggcactctgtccttctacagagtctcctctgacacactgacccacctgtACACATATCACACCACATTCACTGAgaccctctatccagggtttaggGTTTGGTATGGAgactcctcagtgtccctgtgtcagGTGGTTTCACTCTAATCCTGGTCATGTTCAGTAAGACACACTGGAGCAACAATGTAGAATATCTCTAGTGTGTAAACATATGATTGTAAATATTCATGAATAAACACCATTGAAGTTGACAGACATTGTCAACTGGAGTCTAATAGAATGAATCACCACACTGTgttgtaaaaaatgttttaatttacAAACTATTTGTCTTGTTGTTATTGGGCTTCTTGGTGTTTGTACATATTGTTGTCTGTTGAATGTTTATTTGTCAAATTCTTGACACAACAATCATGTTTCTGTATCAACTCAAATACACTGAATGAAATgtacatgtgacagatgtgactaATAAAGTTAATCAAcca

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939637.1 True 908 mRNA 0.43 1 99603751 99604658

Neighbor

gene id symbol gene type direction distance location
LOC110538877 atp5h coding downstream 47436 99539308 ~ 99556315 (-)
LOC110538879 metrnl coding downstream 222780 99351529 ~ 99380971 (-)
LOC110517411 LOC106602071 coding downstream 371863 99218614 ~ 99231888 (-)
LOC110538845 LOC106606260 coding downstream 420645 99178086 ~ 99183106 (-)
LOC110538840 LOC106601903 coding downstream 511506 99090621 ~ 99092245 (-)
LOC110485298 LOC106603827 coding upstream 34981 99639639 ~ 99672638 (-)
LOC110539068 LOC106583735 coding upstream 224772 99829430 ~ 100834884 (-)
LOC110538873 NA coding upstream 245498 99850156 ~ 99857256 (-)
LOC110539071 LOC106602020 coding upstream 342078 99946736 ~ 99965247 (-)
LOC118937866 NA coding upstream 361765 99966423 ~ 99968463 (-)
G1132912 NA non-coding downstream 10867 99591409 ~ 99592884 (-)
G1132908 NA non-coding downstream 14119 99580903 ~ 99589632 (-)
G1132902 NA non-coding downstream 36889 99566329 ~ 99566862 (-)
G1132733 NA non-coding downstream 43493 99560053 ~ 99560258 (-)
G1132732 NA non-coding downstream 44399 99559110 ~ 99559352 (-)
G1132918 NA non-coding upstream 12010 99616668 ~ 99661202 (-)
G1132921 NA non-coding upstream 19148 99623806 ~ 99624613 (-)
G1132929 NA non-coding upstream 39431 99644089 ~ 99644786 (-)
G1132901 NA non-coding upstream 52213 99656871 ~ 99752959 (-)
G1132941 NA non-coding upstream 88644 99693302 ~ 99693700 (-)
G1132625 NA other downstream 276827 99326512 ~ 99326924 (-)
G1132569 LOC106606209 other downstream 427843 99173665 ~ 99177478 (-)
G1132564 NA other downstream 437144 99165948 ~ 99166607 (-)
G1133028 NA other upstream 319402 99924060 ~ 99925126 (-)
G1134054 NA other upstream 605799 100210457 ~ 100211148 (-)
LOC118937853 tmem114 other upstream 653996 100258230 ~ 100295591 (-)
G1134117 NA other upstream 816299 100420957 ~ 100423066 (-)

Expression


Co-expression Network