LOC110539068 (LOC106583735)


Basic Information

Item Value
gene id LOC110539068
gene name LOC106583735
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 99829430 ~ 100834884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939641.1
AATTGACATTCAATAATTACTGTGTttaccacaaccaacatgttggatctctgtttaggggtcagttctctaaaatgagtctctctggggagagagaggaggggggccctgcctctaaaatgagtctctctggggaacaTGACACCAAAGCGAAGAGcCCAAACAAGCGGAAGAGACCAGCCTCCCCTGTTCccagctgtgtgtccatgaagagtgactGGTCTATGGATCATTCTATAGTGTTTAGAGAGGGAGACTTTTCTACTGAACAAAGAAACCGACAGGAGAGATCAGAGTCAGAGATTCTCAGTGGTCAGTCTTCCCAGAGTCATCAAACAGACCTGGCCTCCATATTCAGTTTGCTTGAAGAGAATATTATCACATTAATGAAGAACGAGCTGAAGATGTTCAAGAGGATTCTGAGTTCAGAACTCCCACAAGGCTTTGAGAGTCAGAAGCAGGATAAGGAAGTGGTGGAAGCTGAAGATGAGAAGCAGGAGAGCagtgccagagagggggctctgaagatcacactgcacgtcctgaggaaaatgaaccagaaggagcttgctgacacactggagaaaaGTGAGCTTGCTGTGATTTGCCAACGTGAACTCAAATCTCATCTAAAGAAGAAGTTTCAATGTGTATTTGAGGGGATCGCTAAACAaggaaacccaacacttctcagtaagatctacacagagctctacatcacagagggtggaacaggagaggtcaataatgaacatgagctgagacagattgagacaacaaccaggaaacaAGCAAGACCAGAGACTGCAATCAAATGTAACGACATCTTCAAACCCTTAACTGGACAAGACAAACTTATCAGAACTGTGTTGACAAAGGGAgtcgctggcattggaaaaacagtctccgtgcagaagttcattctggactgggctgaaggaaaagcaaatcaggatgtccaatttgtattttcattcccttttcgggagctgaatttgatgaaagaggacaaacacactttgattgaacttctcaatcacttctcaatggaaaccaaagAATCAAGAATTTCCAACTATGACAAGTAcaaagttctgttcatctttgatggtctggatgagtgtcgactgcccctagacttccagaagaacaagatctgttgtgacgtcacagagtcaacctcagtggatgttctgctgacaaatctcatcaagggaaatctgcttccctctgctctcctctggataactACCCGACCTGCAGCAGCCAATAAGATCCCTTCAGGGTTTGTTGATcaggtgacagaggtacgagggttcaatgatccacagaaggaggagtacttcaggaagagattcagtgatgaggacctggccagcagaatcatctcacacataaagacatcaaggagcctccacatcatgtgccacattccagtcttctgttggatttcTGCAATAGTGCTTGAAGACATGCTGAAACGtaagagagaagagatgcccaagactctgactgagatgtacacacaccttgtggtgtttcataccaaacagaagaatgaaaagtatcttgggaaagaagagacaggtccacactggaataaagagagcattctgtcactgggaaaactggcttttcaacagcttgtgaatggcaatctgattttctatgaaGAAGACCTGAAGGAGGCTGGCATTGATGTCAATGAAGCCTCAGTGTACTCAGGATTGTGCACACAGCTCTTTAAAGAGGAATGTGGGCTGGTCCAGGACAATGTGTACTGCTTTGTGcatctgagcattcaggagtttctggctgctgtatatgtgttcctctcattcatcaacaacaatgagAATCTTATCACCAAACCTCAATCAACATCCAGGAACCTTGTTGCGCTGTTCAGAAACAAGCCTGGAGTTACTGTCTACAAGAGTGCTGTGGATGAAGCCTTACAAAGTGAGACAGGAAACCTGGACcttttcctccgcttccttctgggcctctcactggagtccaatcagaagcacttacgaggtctactgacaatgacaagaagcagctcacagagccatgaagaaacagtcaagtacatcaagaagaagatcagggagaatccctctccagagaggtgcatcaatctgttccactgtctgaatgaactgaatgaccattctctagtggaggagatccaaAGCTACCTGAGATCAGGAAGTCTCTCAGAAGCCAAACTGTCACCtgcacagtggtcagctctggtctttgtgttgctgacttcagaagaggagctggatgtgtttgacctgaagaaatactccagatcagaggaaggtctGCTGAGGCTGCTGCCAGTGGTCAAAGCCTCCAAAGCTGCTCTgctgtcaggctgtggagTCACGGAcaaaggctgtgcttctctggtctcagctctgaagtcaaacccctcacacctgagagagctggacctgagtaacaatgacctgaaggattcaggagtgaagctgctctctgctggactggggaatccccactgtaaactggagactctgaggctgtcaggctgtggagtcacaaaggaaggctgtgcttctctggtctcagctctgaagGCAAATCCCTCACACCCgagagagctggatctgagtaacaatgacctgaaggatttaggagtgaagctgctctctgctggactggggaatccccactctaaactggagactctgaggctgtcaggctgtctagtcacagaggaaggctgttcttctctggtctcagctctgaagtcaaacccctcacacctgagagagctggacctgagctacaatcacccaggagactcaggagtcagactgctctctgctggactggaggatccacactgcagactggagaaactcaaTGTGGAACATGGTGGAGAGTACACAATGAAACCTGGACttagaaaatATGCCTGTGATCTCACACTGGACCTAAACACAGCACACAGActcctctctctgactgaggaTAACAGAAAGGTGACATGTAGCAGGGAGACACAACCGTATCCTGATCACCAGGAGAGATTTGAGTTCTGGCAGCAAGTGCTGTGTAGAGATGGTCTGActgggcgctgttactgggaggtagagGGGAGTGGGGGATTGGCTGACATTGGAATGACATATAAAGGAATCAGCAGGAGAGGAAGGGGTAATGACTGTGTTATTGGATCCAATGACAAGTCTTGGAGTCTGTTCTTTTCTGACAAAAGATACAATGCCAGGCACAATAATGCTCACATTACCTTAGACGTCCCCCCCTCCAGCtcccacagagtaggagtgtatctggactggccagccggcactctgtccttctacagagtctcctctgacacactgacccacctgtACACATTCTACACCACATTCAccgagcccctctatccagggtttaggGTTTATGATGTTACCTCCTCAGTGTCCCTTTGTCAGGTGGTCCCTGTGTCAAACACAACATGATGTTTCACTCTAATC
>TU1289696
ggagagaccagcctccccTGTGCCCAGCGGTCTGTCCATGAAGAGTGACTGGTCTATGGGTACACCTATAAAGTTTAGAGAGGGAGACTTTTCTCTGAAACAAAGAAACCAACAGAAGAGATCAGAGTCAGAGATTCTCAGTGGTCAGTCTTCCCAGATTCATCAAACAGACCTGGCCTCTATATTCAGTTTGCTTGAAGAGAATATTATCACATTAATGAAGAACGAGCTGAAGATGTTCAAGAGGATTCTGAGTTCAGAACTCCCACAAGGCTTTGAGAGTCAGAAGCAGGATAAGGAAGTGGTGGAAGCTGAAGATGAGAAGCAGGAGAGCagtgccagagagggggctctgaagatcacactgcacgtcctgaggaaaatgaaccagaaggagcttgctgacacactggagaaaagtAAGAGCTGTC
>TU1289697
tgatttctctgagactgAGGCAGATATCTTgattttaaaaacaaaaataacatgAATATTTGTCTCTCTGAATTGAAACCATtcaagtgatagattttaaacaaacaCATGTCTGTCATTGACCAACCCCATAATTAGACAGTGATAAAACACACCTTTCATAATTTATTTGAACTATAAAcgctaatttaccaacatttctgaaaatggatatatagcgttttgaaaTTAAACTCTTCTTATGTTTCCCCATCTGAGCTCAGAGTAGATGAGAGATGTAATatttgtctctgttgtgttgaagttcaatcaagcaggagagaccagcctccccTGTGCCCAGCGGTCTGTCCATGAAGAGTGACTGGTCTATGGGTACACCTATAAAGTTTAGAGAGGGAGACTTTTCTCTGAAACAAAGAAACCAACAGAAGAGATCAGAGTCAGAGATTCTCAGTGGTCAGTCTTCCCAGATTCATCAAACAGACCTGGCCTCTATATTCAGTTTGCTTGAAGAGAATATTATCACATTAATGAAGAACGAGCTGAAGATGTTCAAGAGGATTCTGAGTTCAGAACTCCCACAAGGCTTTGAGAGTCAGAAGCAGGATAAGGAAGTGGTGGAAGCTGAAGATGAGAAGCAGGAGAGCagtgccagagagggggctctgaagatcacactgcacgtcctgaggaaaatgaaccagaaggagcttgctgacacactggagaaaagtAAGAGCTGTC
>TU1291798
AGAGATCAGAGTCAGAGATTCTCAGTGGTCAGTCTTCCCAGAGTCATCAAACAGACCTGGCCTCCATATTCAGTTTGCTTGAAGAGAATATTATGACATTTTTGAAGAACGAGCTGAAGATGTTCAAGAGGATTCTTAGTCCAGAACTCCCAGAAGGCTTTGAGAGTCAGAAGCAGGATAAGGAAGTGGTGGACGCTGAAGATGAGAAGCAGGAGAGCagtgccagagagggggctctgaagatcacactgcacatcctgaggaaaatgaaccagaagg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939641.1 False 3521 mRNA 0.47 10 99829430 100834884
TU1289696 False 431 TUCP 0.47 3 99840439 99842926
TU1289697 False 747 TUCP 0.40 3 99840439 99846986
TU1291798 True 279 TUCP 0.47 2 100828518 100828925

Neighbor

gene id symbol gene type direction distance location
LOC110485298 LOC106603827 coding downstream 156792 99639639 ~ 99672638 (-)
LOC118937841 LOC106606276 coding downstream 198357 99563732 ~ 99631073 (-)
LOC118937859 LOC106606280 coding downstream 224772 99603751 ~ 99604658 (-)
LOC110538877 atp5h coding downstream 273115 99539308 ~ 99556315 (-)
LOC110538879 metrnl coding downstream 448459 99351529 ~ 99380971 (-)
LOC110518098 LOC106581592 coding upstream 107290 100942033 ~ 101130515 (-)
LOC118937863 LOC106603827 coding upstream 318660 101148360 ~ 101154161 (-)
LOC110511505 LOC106593326 coding upstream 320509 101154555 ~ 101271098 (-)
LOC118937847 LOC106603827 coding upstream 418702 101253586 ~ 101258211 (-)
LOC118937872 NA coding upstream 436237 101271121 ~ 101282373 (-)
G1132978 NA non-coding downstream 36168 99789870 ~ 99793262 (-)
G1132971 NA non-coding downstream 63827 99763738 ~ 99765603 (-)
G1132968 NA non-coding downstream 71717 99754222 ~ 99757713 (-)
G1132967 NA non-coding downstream 75243 99753397 ~ 99754187 (-)
G1132901 NA non-coding downstream 76471 99656871 ~ 99752959 (-)
G1134340 NA non-coding upstream 9717 100844601 ~ 100873181 (-)
G1134378 NA non-coding upstream 29231 100864115 ~ 100865071 (-)
G1134379 NA non-coding upstream 29774 100864658 ~ 100865737 (-)
G1134387 NA non-coding upstream 100513 100935397 ~ 100936074 (-)
G1134332 NA non-coding upstream 104360 100939244 ~ 100939972 (-)
G1132625 NA other downstream 502506 99326512 ~ 99326924 (-)
LOC110538845 LOC106606260 other downstream 646515 99178086 ~ 99183106 (-)
G1132569 LOC106606209 other downstream 653522 99173665 ~ 99177478 (-)
G1132564 NA other downstream 662823 99165948 ~ 99166607 (-)
LOC110538840 LOC106601903 other downstream 737192 99090621 ~ 99092245 (-)
G1134339 LOC106603894 other upstream 105521 100940405 ~ 100941907 (-)
G1134323 NA other upstream 158926 100993810 ~ 100998516 (-)
G1134312 LOC106603827 other upstream 241178 101076062 ~ 101088555 (-)
G1134288 NA other upstream 611282 101446166 ~ 101451979 (-)

Expression


Co-expression Network