Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110538873 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 99850156 ~ 99857256 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: protein NLRC3-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005035282.1 | False | 585 | mRNA | 0.42 | 3 | 99850156 | 99857256 |
| TU1289695 | True | 397 | lncRNA | 0.44 | 3 | 99850209 | 99857121 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110485298 | LOC106603827 | coding | downstream | 177518 | 99639639 ~ 99672638 (-) |
| LOC118937841 | LOC106606276 | coding | downstream | 219083 | 99563732 ~ 99631073 (-) |
| LOC118937859 | LOC106606280 | coding | downstream | 245498 | 99603751 ~ 99604658 (-) |
| LOC110538877 | atp5h | coding | downstream | 293841 | 99539308 ~ 99556315 (-) |
| LOC110538879 | metrnl | coding | downstream | 469185 | 99351529 ~ 99380971 (-) |
| LOC110539071 | LOC106602020 | coding | upstream | 89480 | 99946736 ~ 99965247 (-) |
| LOC118937866 | NA | coding | upstream | 109167 | 99966423 ~ 99968463 (-) |
| LOC110539073 | LOC106606306 | coding | upstream | 112418 | 99969674 ~ 99985905 (-) |
| LOC118937853 | tmem114 | coding | upstream | 400974 | 100258230 ~ 100295591 (-) |
| carhsp1 | LOC106592621 | coding | upstream | 576995 | 100434251 ~ 100462726 (-) |
| G1132978 | NA | non-coding | downstream | 56894 | 99789870 ~ 99793262 (-) |
| G1132971 | NA | non-coding | downstream | 84553 | 99763738 ~ 99765603 (-) |
| G1132968 | NA | non-coding | downstream | 92443 | 99754222 ~ 99757713 (-) |
| G1132967 | NA | non-coding | downstream | 95969 | 99753397 ~ 99754187 (-) |
| G1132963 | NA | non-coding | downstream | 100300 | 99744834 ~ 99749856 (-) |
| G1133000 | NA | non-coding | upstream | 2389 | 99859645 ~ 99860074 (-) |
| G1133008 | NA | non-coding | upstream | 21622 | 99878878 ~ 99880576 (-) |
| G1133009 | NA | non-coding | upstream | 25316 | 99882572 ~ 99883918 (-) |
| G1133012 | NA | non-coding | upstream | 28744 | 99886000 ~ 99886219 (-) |
| G1133026 | LOC106602045 | non-coding | upstream | 60418 | 99917674 ~ 99919868 (-) |
| G1132625 | NA | other | downstream | 523232 | 99326512 ~ 99326924 (-) |
| LOC110538845 | LOC106606260 | other | downstream | 667241 | 99178086 ~ 99183106 (-) |
| G1132569 | LOC106606209 | other | downstream | 674248 | 99173665 ~ 99177478 (-) |
| G1132564 | NA | other | downstream | 683549 | 99165948 ~ 99166607 (-) |
| LOC110538840 | LOC106601903 | other | downstream | 757918 | 99090621 ~ 99092245 (-) |
| G1133028 | NA | other | upstream | 66804 | 99924060 ~ 99925126 (-) |
| G1134054 | NA | other | upstream | 353201 | 100210457 ~ 100211148 (-) |
| G1134117 | NA | other | upstream | 563701 | 100420957 ~ 100423066 (-) |
| G1134183 | NA | other | upstream | 646349 | 100503605 ~ 100504088 (-) |
