carhsp1 (LOC106592621)


Basic Information

Item Value
gene id carhsp1
gene name LOC106592621
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 100434251 ~ 100462726 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939635.1
CCTACTCCACGATGACGTCATCGCTAGATGGGTCCCGCCCATCGGGACTCGCACTGAAACGAACGGAGAAACAAACCCAGCTTCACTGCTGTCGTTGTACTTCACACGTCCTGTCTATTCTCCCAAATAACTATTTTGTTGTGAGAAAAGGTTACGAATTGATTGATAACGATCTCAGACTGCAGGGAGTCCGTTTTTATCCATTACCTGCTGCTCGACCTCAAAAGGAAAGTGTTTTTGTTTCCTCCACGGAAAAGTTCGGAAAAGGTGGTTGTCACGACTACCCTTCCTCACACAATGTCTTCTGAAGCCACACGCATCCAGGGGTCAGTATCCCCATGCTCTACGACCCCTCCCCTGACCTCTGGGGCCCCTGGCTCCCCggtctccccagtctctccagTGTCCCCTGGGTCCCTGTGCCCGCCAGCCTCCCGGTACCGAGACCGTTCCCCCTCCCCCATGAGAGGTTACCTCATACCCAGCCCTCTGCCAACCAGACGTACTAGGACCTGCTCCGCggcggAGCGGGCAGCGGAGGGCCCGTCATTCAGCGGTGTATGTAAGTGTTTCTCTCGGACTAAAGGACACGGCTTCATCACACCAGCCGACGGAGGCAGCGACATCTTTGTCCACATCTCAGAtATCGAGGGGGAATACGTGCCAATGGAAGGAGATGAGGTGAGCTATAAGGTGTGCTCCATCCCTCCCAAGTACCAGAAGATCCAGGCGGTGGATGTCACCATCACCCACCTCAACCCAGGATCGAAGCACGAGACCTGGGGCGGGGCGCTGCTCAGCTCCTCCTGAGTCCCGGAGGTTTCTGGAGGGGAGAAATGTCAACAGGGAAAGGGTCCCCTTCTTTTTTAGTTTTTCCCGAAGGGACATATGGGTTAATGCTTGTTGTGGGAGGGAATGGAAAGGTTGGCATTTGAATAGAGGAGACGTGTATCATTAGACGGGAAGGTTAATTCAATAAAGCTGCATCACTTCAACAAAA

Function

NR:

description
calcium-regulated heat stable protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939635.1 True 1000 mRNA 0.54 4 100434251 100462726

Neighbor

gene id symbol gene type direction distance location
LOC118937853 tmem114 coding downstream 138660 100258230 ~ 100295591 (-)
LOC110539073 LOC106606306 coding downstream 448346 99969674 ~ 99985905 (-)
LOC118937866 NA coding downstream 465788 99966423 ~ 99968463 (-)
LOC110539071 LOC106602020 coding downstream 469004 99946736 ~ 99965247 (-)
LOC110538873 NA coding downstream 576995 99850156 ~ 99857256 (-)
nat15 natu coding upstream 10828 100473554 ~ 100499497 (-)
LOC118937869 NA coding upstream 27929 100490607 ~ 100491915 (-)
eci1 LOC106596253 coding upstream 67458 100530184 ~ 100543453 (-)
c12h16orf72 LOC106606270 coding upstream 86461 100549187 ~ 100558850 (-)
LOC118937871 NA coding upstream 161444 100623875 ~ 100625726 (-)
G1134117 NA non-coding downstream 11185 100420957 ~ 100423066 (-)
G1134151 NA non-coding downstream 54497 100379151 ~ 100379754 (-)
G1134147 NA non-coding downstream 64547 100365687 ~ 100369704 (-)
G1134148 NA non-coding downstream 66831 100366366 ~ 100367420 (-)
G1134142 NA non-coding downstream 74259 100359470 ~ 100359992 (-)
G1134116 NA non-coding upstream 4766 100467492 ~ 100470548 (-)
G1134115 NA non-coding upstream 7912 100470638 ~ 100472124 (-)
G1134179 NA non-coding upstream 33867 100496593 ~ 100496906 (-)
G1134180 NA non-coding upstream 37439 100500165 ~ 100500664 (-)
G1134054 NA other downstream 223103 100210457 ~ 100211148 (-)
G1133028 NA other downstream 509125 99924060 ~ 99925126 (-)
G1132625 NA other downstream 1107327 99326512 ~ 99326924 (-)
G1134183 NA other upstream 40879 100503605 ~ 100504088 (-)
LOC118937858 LOC106591175 other upstream 165717 100628440 ~ 100651699 (-)
LOC118937873 LOC106603827 other upstream 354546 100816544 ~ 100821913 (-)
G1134316 LOC106603753 other upstream 364450 100827176 ~ 100828092 (-)

Expression


Co-expression Network