LOC118937869


Basic Information

Item Value
gene id LOC118937869
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 100490607 ~ 100491915 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035283.1
ACCTGCTATACACTTCTACCacaacaggtaggtaggtagagaccCGCTATACACTTCTACCacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtagagacctgctatacacttctaccacaacaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctGCTATACACTTCTACCACAACAGGTAGGGACTATACACTTCTACCACAACAGGTAGGTAGAGACCTGCTATACACTTCTACCacaacaggtaggtaggtagagaccCGCTATACACTTCTACCacaacaggtaggtaggtagagacctGCTATACACTTCTACCACAACAGGTAGGGACTATACACTTCTACCacaacaggtaggtaggtagagacctGCTATACACTTCTACCACAACAGGTAGGTAGAGACCTGCTATACACTTCTACCACAACAGGTAGGTAGAGACCTGCTATACACTTCTACCACAACAGgtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctGCTATACACTTCTACCACAACAGgtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagataccTGCTATACACTTCTACCacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctGCTATACACTTCTACCACAACAGGTAGGTAGAGACCTGCTATACACTTCTACCACAACAGgtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctgctatacacttc
>XR_005035284.1
ACCTGCTATACACTTCTACCacaacaggtaggtaggtagagaccCGCTATACACTTCTACCacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtagagacctgctatacacttctaccacaacaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctGCTATACACTTCTACCACAACAGGTAGGGACTATACACTTCTACCACAACAGGTAGGTAGAGACCTGCTATACACTTCTACCacaacaggtaggtaggtagagaccCGCTATACACTTCTACCacaacaggtaggtaggtagagacctGCTATACACTTCTACCACAACAGGTAGGGACTATACACTTCTACCacaacaggtaggtaggtagagacctGCTATACACTTCTACCACAACAGGTAGGTAGAGACCTGCTATACACTTCTACCACAACAGGTAGGTAGAGACCTGCTATACACTTCTACCACAACAGgtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctGCTATACACTTCTACCACAACAGgtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagataccTGCTATACACTTCTACCacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctGCTATACACTTCTACCACAACAGGTAGGTAGAGACCTGCTATACACTTCTACCACAACAGgtaggtagagacctgctatacacttctaccacaacagg
>TU1291507
ggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctGCTATACACTTCTACCACAACAGGTAGGTAGAGAgacctgctatacacttctaccacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctgctatacacttctaccaca
>TU1291508
caggtaggtaggtagagacctGCTATACACTTCTACCACAACAGGTAGGTAGAGACCTGCTATACACTTCTACCACAACAGGTAGGTAGAGACCTGCTATACACTTCTACCACAACAGgtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctgctatacacttctaccacaacaggtaggtaggtagagacctGCTATACACTTCTACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035283.1 False 1026 mRNA 0.46 4 100490655 100491915
XR_005035284.1 False 993 mRNA 0.46 4 100490684 100491915
TU1291507 False 237 lncRNA 0.46 2 100490607 100490952
TU1291508 True 234 lncRNA 0.47 2 100491214 100491517

Neighbor

gene id symbol gene type direction distance location
carhsp1 LOC106592621 coding downstream 27929 100434251 ~ 100462726 (-)
LOC118937853 tmem114 coding downstream 195064 100258230 ~ 100295591 (-)
LOC110539073 LOC106606306 coding downstream 504750 99969674 ~ 99985905 (-)
LOC118937866 NA coding downstream 522192 99966423 ~ 99968463 (-)
LOC110539071 LOC106602020 coding downstream 525408 99946736 ~ 99965247 (-)
eci1 LOC106596253 coding upstream 38269 100530184 ~ 100543453 (-)
c12h16orf72 LOC106606270 coding upstream 57272 100549187 ~ 100558850 (-)
LOC118937871 NA coding upstream 132255 100623875 ~ 100625726 (-)
LOC118937858 LOC106591175 coding upstream 136525 100628440 ~ 100651699 (-)
LOC118937873 LOC106603827 coding upstream 324629 100816544 ~ 100821913 (-)
G1134115 NA non-coding downstream 18531 100470638 ~ 100472124 (-)
G1134116 NA non-coding downstream 20107 100467492 ~ 100470548 (-)
G1134165 NA non-coding downstream 48833 100441395 ~ 100441822 (-)
G1134117 NA non-coding downstream 67589 100420957 ~ 100423066 (-)
G1134151 NA non-coding downstream 110901 100379151 ~ 100379754 (-)
G1134179 NA non-coding upstream 4678 100496593 ~ 100496906 (-)
G1134180 NA non-coding upstream 8250 100500165 ~ 100500664 (-)
G1134181 NA non-coding upstream 8806 100500721 ~ 100501020 (-)
G1134182 NA non-coding upstream 10284 100502199 ~ 100502548 (-)
G1134191 NA non-coding upstream 29688 100521603 ~ 100523169 (-)
G1134054 NA other downstream 279507 100210457 ~ 100211148 (-)
G1133028 NA other downstream 565529 99924060 ~ 99925126 (-)
G1132625 NA other downstream 1163731 99326512 ~ 99326924 (-)
G1134183 NA other upstream 11690 100503605 ~ 100504088 (-)
G1134316 LOC106603753 other upstream 335261 100827176 ~ 100828092 (-)

Expression


Co-expression Network