Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110539064 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 100520662 ~ 100529349 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| deoxyribonuclease-1-like |
| id | name | namespace |
|---|---|---|
| GO:0000737 | DNA catabolic process, endonucleolytic | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005635 | nuclear envelope | cellular_component |
| GO:0004530 | deoxyribonuclease I activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005035280.1 | False | 352 | mRNA | 0.55 | 3 | 100521665 | 100529349 |
| XR_005035279.1 | False | 345 | mRNA | 0.55 | 3 | 100522496 | 100529349 |
| XR_005035277.1 | False | 547 | mRNA | 0.55 | 3 | 100523922 | 100529349 |
| XR_005035278.1 | False | 443 | mRNA | 0.54 | 3 | 100524382 | 100529349 |
| TU1290150 | False | 357 | lncRNA | 0.56 | 3 | 100520662 | 100529333 |
| TU1290153 | False | 355 | lncRNA | 0.56 | 3 | 100523928 | 100529333 |
| TU1290155 | False | 355 | lncRNA | 0.56 | 3 | 100524366 | 100529333 |
| TU1290151 | True | 327 | lncRNA | 0.55 | 2 | 100524737 | 100529333 |
100,510,000
100,512,000
100,514,000
100,516,000
100,518,000
100,520,000
100,522,000
100,524,000
100,526,000
100,528,000
100,530,000
NC_048576.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110515889 | LOC105013474 | coding | upstream | 3277 | 100504433 ~ 100518388 (+) |
| LOC110512779 | abat | coding | upstream | 99842 | 100357004 ~ 100421823 (+) |
| LOC110514653 | mettl22 | coding | upstream | 169490 | 100307520 ~ 100352637 (+) |
| LOC110515014 | rbfox1 | coding | upstream | 325291 | 100109206 ~ 100196374 (+) |
| LOC110487496 | LOC106602020 | coding | upstream | 575537 | 99921447 ~ 99946128 (+) |
| LOC110539066 | usp7 | coding | downstream | 33117 | 100562466 ~ 100624182 (+) |
| LOC110538862 | ptx4 | coding | downstream | 145378 | 100674727 ~ 100688312 (+) |
| LOC110538858 | clcn7 | coding | downstream | 159910 | 100689259 ~ 100749699 (+) |
| LOC118937852 | LOC106606251 | coding | downstream | 235763 | 100765112 ~ 100809399 (+) |
| LOC110510646 | LOC106603827 | coding | downstream | 770558 | 101299907 ~ 101605694 (+) |
| G1133223 | NA | non-coding | upstream | 12290 | 100508107 ~ 100509375 (+) |
| G1133207 | NA | non-coding | upstream | 31893 | 100474019 ~ 100489772 (+) |
| G1133210 | NA | non-coding | upstream | 43418 | 100477956 ~ 100478247 (+) |
| G1133204 | NA | non-coding | upstream | 51102 | 100469944 ~ 100470563 (+) |
| G1133205 | NA | non-coding | upstream | 53181 | 100468200 ~ 100468484 (+) |
| G1133077 | NA | non-coding | downstream | 834 | 100530183 ~ 100531748 (+) |
| G1133231 | NA | non-coding | downstream | 3167 | 100532516 ~ 100532847 (+) |
| G1133234 | NA | non-coding | downstream | 16395 | 100545744 ~ 100546505 (+) |
| G1133237 | NA | non-coding | downstream | 17445 | 100546794 ~ 100549109 (+) |
| G1133236 | LOC106606270 | non-coding | downstream | 25835 | 100555184 ~ 100558101 (+) |
| G1133219 | NA | other | upstream | 20220 | 100501117 ~ 100501445 (+) |
| G1133209 | NA | other | upstream | 44806 | 100475869 ~ 100476859 (+) |
| G1132887 | NA | other | upstream | 510152 | 100009763 ~ 100011513 (+) |
| LOC110513175 | LOC106603827 | other | upstream | 715114 | 99805034 ~ 99817184 (+) |
| G1133263 | NA | other | downstream | 99091 | 100628020 ~ 100631418 (+) |
| G1133325 | NA | other | downstream | 270193 | 100799542 ~ 100801010 (+) |
| G1133359 | LOC106603827 | other | downstream | 620938 | 101150287 ~ 101154319 (+) |
| G1133510 | NA | other | downstream | 627644 | 101156993 ~ 101170260 (+) |
