c12h16orf72 (LOC106606270)


Basic Information

Item Value
gene id c12h16orf72
gene name LOC106606270
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 100549187 ~ 100558850 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939623.1
GCGGACGTCGGCAACGTCAAAAAACTAGTTGAAGAGTCTTTTCAGACCGGAGTAGTCGGTTTGAGAAACAGCTATTAAGTCATAACTAAATTAATGAATTTCCTAACGGACATTTATTCGCATCGCCAAGTAATTTATTAATCGACATACTAAAGTTGTAATCTTACCCGAGGGTTTTAACGGTGTAAAaatggaggagaagaagaaagacgGAGACCCGGAGATTCAGGAACACGGACCCGAACATTGGTTCTCAAAATGGGAGCGGCAGTGTTTGGCCGAAGCGGAGCAAAGAGATTCAAACGAGGAGGAGGCCGATAACGACCAGGATAAATTATGGCATCTCTTCCAGAATTCCGCCACTGCCGTGGCTCAGCTCTACAAAGACCGAGTATGTCACCAACAGGGGGGGCTTTCTTTGTGGGTGCCGTTTCAGAACGCGGCCACAGCCGTGACCAACCTGTACAAAGAGTCTGTGGAGGCCCACCAGCGTAGCTACGACCTAGGTATACAGATCGGCCACCAGCGTCGCAACAAGGATGTGCTGGCCTGGGTGAAGAAAAGGAGGAGAACCATCCGGCGAGAGGACCTCATCAGCTTCCTGTGTGGCCGGGCCCCACCCCCCCGGACCTCCAGAGCCACCCTCACCCCGGGACACAGACTGACCATGGTCTCCCCTAACCGGCCTCCCCCGGCCCCTGAGACAGACTCCTCTGTGGAGGCTGACCTCCAGCCCTTCAGAGAGGCCATCGCACTGCATGGTCTAAGTGGGGCTATGGCCAGCATCAGTGTTCGTTCCGGTACCCCAGGCTCTCCCACCCACGTGGGGGGTGCTGCTGGCGGTGGGGGTGGGTCGACCCCGGTGGGGCGTCGGCGTAACGGTCTCCATGACGTGGACCTGAACACTTTCATCTCCGAGGAGATGGCCCTGCACCTGGACGCTAACCCCAGGAAACGCAGCTCCGCCCAGTGCAATGACGTCATAACAGACTCCCCCACCCATAAACGCAACCGGATGATCTGATTGGGCAGCCCAGCCCCCGGGAGGGTTAAGAGACCTTtgtgggaggggtggggggggttgagATCTTGAAAACAGACAGACTGAAGGATGTATGGCTGTGGAGTGAACTGGCGTTGAGGACTAAGGAGGCCGTCCATTTAGTTGAGTGGGTGGTGTCCTCctgtccttgtctcctttcctagTTGAGAGCACTGGTCTAAACTGAAAGCATGCTTGTTGGAAACCTGTCATCCATCCTTCCTAACCCCGTTAGGCTGCATCTACACAGGTAGCCCAATTCAGatctttttccactaattgggcctttttgaccaatcagatcagttctTTTCCCAGTAAATGGGCAACAGGACAGAATTGTGCTGTCTTTGTAAACGCAGCCTCAGTGATCAGTGACCGTGAGGAACGGAAGCGAGGACAGAAGGGCATCGAGGAGGTTGGGATGGAGCCCCCGTTCAGAGGAGAAATGCACTGTgctgatttaaaataaaaaagaagCCACTTGATCCTCT

Function

NR:

description
UPF0472 protein C16orf72 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939623.1 True 1536 mRNA 0.54 4 100549187 100558850

Neighbor

gene id symbol gene type direction distance location
eci1 LOC106596253 coding downstream 5734 100530184 ~ 100543453 (-)
nat15 natu coding downstream 49690 100473554 ~ 100499497 (-)
LOC118937869 NA coding downstream 57272 100490607 ~ 100491915 (-)
carhsp1 LOC106592621 coding downstream 86461 100434251 ~ 100462726 (-)
LOC118937853 tmem114 coding downstream 253596 100258230 ~ 100295591 (-)
LOC118937871 NA coding upstream 65320 100623875 ~ 100625726 (-)
LOC118937858 LOC106591175 coding upstream 69590 100628440 ~ 100651699 (-)
LOC118937873 LOC106603827 coding upstream 257694 100816544 ~ 100821913 (-)
LOC110518098 LOC106581592 coding upstream 383324 100942033 ~ 101130515 (-)
LOC118937863 LOC106603827 coding upstream 594694 101148360 ~ 101154161 (-)
G1134112 NA non-coding downstream 64 100546791 ~ 100549123 (-)
G1134198 NA non-coding downstream 2639 100545885 ~ 100546548 (-)
G1134197 NA non-coding downstream 4290 100544655 ~ 100544897 (-)
G1134196 NA non-coding downstream 5306 100543600 ~ 100543881 (-)
G1134194 NA non-coding downstream 19398 100529049 ~ 100529789 (-)
G1134204 NA non-coding upstream 10149 100568999 ~ 100570070 (-)
G1134206 NA non-coding upstream 13668 100572518 ~ 100573364 (-)
G1134219 NA non-coding upstream 59812 100618662 ~ 100619505 (-)
G1134223 NA non-coding upstream 81392 100640242 ~ 100640758 (-)
G1134183 NA other downstream 45099 100503605 ~ 100504088 (-)
G1134117 NA other downstream 126121 100420957 ~ 100423066 (-)
G1134054 NA other downstream 338039 100210457 ~ 100211148 (-)
G1134316 LOC106603753 other upstream 268326 100827176 ~ 100828092 (-)
G1134339 LOC106603894 other upstream 381555 100940405 ~ 100941907 (-)

Expression


Co-expression Network