LOC118937871


Basic Information

Item Value
gene id LOC118937871
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 100623875 ~ 100625726 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035286.1
ACTGGAAACACACCCAATCAAGGAGGAACAAGGGCATTGATCAGGGCCCGTATCCACCAAGAGTCTCAGGATAGTAGAGCTGGTCTAGCAGCAGTTTGGCCTTTTTAGATCGTAAAGGAATAAGCTTGTacggacagatcctagatcagcactcctaaaTCAAAGACACTCTGTGGATAACGAGCCCTGATCTCATCATCTAGGGTGACAAAACTCCAGTAACTTTTTTCCCCAGAATTCCCTGGGTTTTCCCAGAAATCCCTGTTGGATGATTCCTCTGAATCAGAGGAGTAATACGCAGGTAGTCTGGAATCCTCCAACTGGGATGTGTGGAAAACCTGGGagatttttttgggggaaaaGTTATTTCTAAACCCTAATCCCACCGGTTAGTAGCGCAGCTCGTTATCTTAACCCTTAACATCACTATCAGAACCAACGGGTGCCGTTagttaaaacaaaaaaacaggagAAAACAGAACCAAAACAAGAATCTAAAGAATCAAGGAACCCCTAAAACGAAAACAAAACTACACAAGAAATATGAACACCTGAATCTTCTCAGTTTGTAGCCAACCAATAACATCGTTCTGTGTTTCTCATTTcacgttttttttgttgtgttttctttaaatatatacacacacaatttcAAATCTCTTCACAAAGCCAACTATGATGGGCTtttagggaggggaggggagggcatTCCATCTGTGCTTAAGAAAAAAAAGGTCAGTGTGTTTTGTTGTTCTAATAATAATTATAGTAACACTGGTTCTGTGTATATATGGTGAAACCAGAGGGCTCACTAATGGCCGAAACTTCCTACTAAAGCAGCACTACTCAAACTCCCCCAACACCAGAGGAGGTACAGCCCATCCCAAACCCTCAGTCAAACTCCCCCAAACACAAACCCTCAGTCAAACTCCCCCAACACCAGAGGAGGTACAGCCCATCACAAACCCTCAGTCAAACTCCCCCAAAACACAAACCCTCAGTCAAACTCCCCCAAACACCAGAGGAGGTGCAGCCCATCACAAACCCTCAGGGATGGAGGGAACATAAcagggcaggagaagaggagaggaagggcaACATTAAAATCATAAGTAGGACCAAAGTTGCCATTTACCAGTCCTGAGAAACGGCTTTGATATGGAGTGGCAACGTGCAAGATGAAAGTACAGACCACTTCTTctctttttacatttattttaaacagatgctgtgtatttttattttattatacaaGAAGATATTGcagaaaaaaaagacaaaaactgatttttttttaaatttttttaaagaTGGAAACACTTTGACTAGTTGACtaaaggagaagggggaggggggggggggaggatatGAAGAGGATCACATCAGGAATTACTAGTCTCAAGCTTCAACCCTTCTGCAACTGGTTCTCTTCTTTAAAAGACCAAATCATCCTTCTTggtttctgccccccccccccc
>TU1291431
CTCAGGATAGTAGAGCTGGTCTAGCAGCAGTTTGGCCTTTTTAGATCGTAAAGGAATAAGCTTGTacggacagatcctagatcagcactcctaaaTCAAAGACACTCTGTGGATAACGAGCCCTGATCTCATCATCTAGGGTGACAAAACTCCAGTAACTTTTTTCCCCAGAATTCCCTGGGTTTTCCCAGAAATCCCTGTTGGATGATTCCTCTGAATCAGAGGAGTAATACGCAGGTAGTCTGGAATCCTCCAACTGGGATGTGTGGAAAACCTGGGagatttttttgggggaaaaGTTATTTCTAAACCCTAATCCCACCGGTTAGTAGCGCAGCTCGTTATCTTAACCCTTAACATCACTATCAGAACCAACGGGTGCCGTTagttaaaacaaaaaaacaggagAAAACAGAACCAAAACAAGAATCTAAAGAATCAAGGAACCCCTAAAACGAAAACAAAACTACACAAGAAATATGAACACCTGAATCTTCTCAGTTTGTAGCCAACCAATAACATCGTTCTGTGTTTCTCATTTcacgttttttttgttgtgttttctttaaatatatacacacacaatttcAAATCTCTTCACAAAGCCAACTATGATGGGCTtttagggaggggaggggagggcatTCCATCTGTGCTTAAGAAAAAAAAGGTCAGTGTGTTTTGTTGTTCTAATAATAATTATAGTAACACTGGTTCTGTGTATATATGGTGAAACCAGAGGGCTCACTAATGGCCGAAACTTCCTACTAAAGCAGCACTACTCAAACTCCCCCAACACCAGAGGAGGTACAGCCCATCACAAACCCTCAGTCAAACTCCCCCAAAACACAAACCCTCAGTCAAACTCCCCCAAACACCAGAGGAGGTGCAGCCCATCACAAACCCTCAGGGATGGAGGGAACATAAcagggcaggagaagaggagaggaagggcaACATTAAAATCATAAGTAGGACCAAAGTTGCCATTTACCAGTCCTGAGAAACGGCTTTGATATGGAGTGGCAACGTGCAAGATGAAAGTACAGACCACTTCTTctctttttacatttattttaaacagatgctgtgtatttttattttattatacaaGAAGATATTGcagaaaaaaaagacaaaaactgatttttttttaaatttttttaaagaTGGAAACACTTTGACTAGTTGACtaaaggagaagggggaggggggggggggaggatatGAAGAGGATCACATCAGGAATTACTAGTCTCAAGCTTCAACCCTTCTGCAACTGGTTCTCTTCTTTAAAAGACCAAATCATCCTTCTTggtttctgccccccccccccccccccactatacGCAGCAGCGCTCTTTACGTTTTGAAACAACTCTTatcattaaaaacaaaaaacaaaataaaccAGGAAAAAGTAAAGTTCATCTTCCTGTCCTTTCTCCAatttcatttctttcatccagacaaaaaaaaTAGGCAGTCGGAGTTAGAGAAGCCAAAAACCTAACAGCCTCAAAAACAGTAGAAGGGCGGGAGGTGgtggggggaggaagggggagagggggtttGGGTGGAAGGCGGGGGTTTGGGTCGAAGGGGTGGTATagtattcatcatcatcatcat
>TU1291432
CTCAGGATAGTAGAGCTGGTCTAGCAGCAGTTTGGCCTTTTTAGATCGTAAAGGAATAAGCTTGTacggacagatcctagatcagcactcctaaaTCAAAGACACTCTGTGGATAACGAGCCCTGATCTCATCATCTAGGGTGACAAAACTCCAGTAACTTTTTTCCCCAGAATTCCCTGGGTTTTCCCAGAAATCCCTGTTGGATGATTCCTCTGAATCAGAGGAGTAATACGCAGGTAGTCTGGAATCCTCCAACTGGGATGTGTGGAAAACCTGGGagatttttttgggggaaaaGTTATTTCTAAACCCTAATCCCACCGGTTAGTAGCGCAGCTCGTTATCTTAACCCTTAACATCACTATCAGAACCAACGGGTGCCGTTagttaaaacaaaaaaacaggagAAAACAGAACCAAAACAAGAATCTAAAGAATCAAGGAACCCCTAAAACGAAAACAAAACTACACAAGAAATATGAACACCTGAATCTTCTCAGTTTGTAGCCAACCAATAACATCGTTCTGTGTTTCTCATTTcacgttttttttgttgtgttttctttaaatatatacacacacaatttcAAATCTCTTCACAAAGCCAACTATGATGGGCTtttagggaggggaggggagggcatTCCATCTGTGCTTAAGAAAAAAAAGGTCAGTGTGTTTTGTTGTTCTAATAATAATTATAGTAACACTGGTTCTGTGTATATATGGTGAAACCAGAGGGCTCACTAATGGCCGAAACTTCCTACTAAAGCAGCACTACTCAAACTCCCCCAACACCAGAGGAGGTACAGCCCATCCCAAACCCTCAGTCAAACTCCCCCAAACACAAACCCTCAGTCAAACTCCCCCAACACCAGAGGAGGTGCAGCCCATCACAAACCCTCAGGGATGGAGGGAACATAAcagggcaggagaagaggagaggaagggcaACATTAAAATCATAAGTAGGACCAAAGTTGCCATTTACCAGTCCTGAGAAACGGCTTTGATATGGAGTGGCAACGTGCAAGATGAAAGTACAGACCACTTCTTctctttttacatttattttaaacagatgctgtgtatttttattttattatacaaGAAGATATTGcagaaaaaaaagacaaaaactgat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035286.1 False 1478 mRNA 0.43 2 100624170 100625726
TU1291431 False 1632 lncRNA 0.42 2 100623875 100625662
TU1291432 True 1145 lncRNA 0.41 2 100624360 100625662

Neighbor

gene id symbol gene type direction distance location
c12h16orf72 LOC106606270 coding downstream 65320 100549187 ~ 100558850 (-)
eci1 LOC106596253 coding downstream 80717 100530184 ~ 100543453 (-)
nat15 natu coding downstream 124673 100473554 ~ 100499497 (-)
LOC118937869 NA coding downstream 132255 100490607 ~ 100491915 (-)
carhsp1 LOC106592621 coding downstream 161444 100434251 ~ 100462726 (-)
LOC118937858 LOC106591175 coding upstream 2714 100628440 ~ 100651699 (-)
LOC118937873 LOC106603827 coding upstream 190818 100816544 ~ 100821913 (-)
LOC110518098 LOC106581592 coding upstream 316448 100942033 ~ 101130515 (-)
LOC118937863 LOC106603827 coding upstream 527818 101148360 ~ 101154161 (-)
LOC110511505 LOC106593326 coding upstream 529667 101154555 ~ 101271098 (-)
G1134219 NA non-coding downstream 4665 100618662 ~ 100619505 (-)
G1134206 NA non-coding downstream 50806 100572518 ~ 100573364 (-)
G1134204 NA non-coding downstream 54100 100568999 ~ 100570070 (-)
G1134112 NA non-coding downstream 75047 100546791 ~ 100549123 (-)
G1134198 NA non-coding downstream 77622 100545885 ~ 100546548 (-)
G1134223 NA non-coding upstream 14516 100640242 ~ 100640758 (-)
G1134239 NA non-coding upstream 54265 100679991 ~ 100680488 (-)
G1134272 NA non-coding upstream 142753 100768479 ~ 100814052 (-)
G1134273 NA non-coding upstream 144832 100770558 ~ 100770849 (-)
G1134183 NA other downstream 120082 100503605 ~ 100504088 (-)
G1134117 NA other downstream 201104 100420957 ~ 100423066 (-)
LOC118937853 tmem114 other downstream 328604 100258230 ~ 100295591 (-)
G1134054 NA other downstream 413022 100210457 ~ 100211148 (-)
G1134316 LOC106603753 other upstream 201450 100827176 ~ 100828092 (-)
G1134339 LOC106603894 other upstream 314679 100940405 ~ 100941907 (-)

Expression


Co-expression Network