LOC110538862 (ptx4)


Basic Information

Item Value
gene id LOC110538862
gene name ptx4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 100674727 ~ 100688312 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939596.1
TCCCATCCCTGCACTGccccatccctcttctctctccttcacctctaTTAGTTATCCTCGGTAGTTCTCAGAGTTAACAACCTCCGCACCTCTAGACACCCAGACCCCGGCCCGGCCCTGCCCTAACCCAGCCACGCTGCACTATGACCAGCCTCAGAGCCGGACGGAGGGCCCTGGCCCTGGTTCTCCTGGTTGTCCTCCAGCTTCAGGCCTGTAGGGGACAGGGGACTGCTGAGCTCAGGAAGCCCATCTACCAGAGACTCAGACGACTTGACGATCAGTTCCGTCGATTCCAGGAACAGACCCTGAGCCGGTTAGACCTTCTGAACCGTATGTCTAATGTGTCGACCTCCCTAGTAGAGGTCAGAGTTCAGACCCTGTCTGACCAACACAGAAACCTCACCCAGGAACTAACACAACTCAGAGACACCACCACACAGGAGCTGGACGTCCTGAAAGACCAGAGCAGTAAACTACAGAAGAAGAACAAGAGGATGGAGGGAAGACTGGCCTCGCTGGAGAGAGGactgagacacagacagggacagggCAGCAGGCAGACCCAGAGACTGAGTCAGGAGCAGGAAGAGTCTCTCTCCAGCCTCACCCTGGAGCTCCACAGCCAGGAGGGGCGACTCGACTCCCTGGAGGCCCAGCGAGAGGAGCTTCTGGTCGGGCTGAGAGGTCTCCAGGAGTCCCTGAGGGAGCAAGATCTCCGGATGAGCCGGCTCGAATTGAGGCTGGGGGAGCTTTTACAGGGGAATGTAATCTCTTCCAGGGGATCAGAAAGGACAGGAAACACCCTCACCTCCAACCTCACCCCCCAGGACACAGCACCCCCACGGAGGACCCAGGCCTCCAGAGGACAGAGCCCAAGACAGGACACCCAGACATATTACCAGCCCCAGCCTCAGGCTAACATTCAGCCTCAGCCCTACTCTCAGCCCCATCCCCAACCCCATTCCCAGCCAAAACACACAAAAGAAAGGAGGATGAGGACAAGACTACAGGCTCCACCTCCCCACCCCACACAGCCTCCTTCTCAGTcccaggaggagaggaagaggctgggggagagaggacaggagagcccCCGGCCTGGTCTTCCTCAACAGGGGCCAAAACCACAGTCTGTGGAGGAaacgagagaggagggagagatggagaggaggaggggggatgaggtgtggaggaggagtgAAGTGACGCAGacagagatgaggaggggagaggaagagcggacagagaggaggagaggagaggaagagcggacagagaggaggaaggaagaggaagagcggacagagaggaggaaggaagaggaagagcagacagagaggaggaaggaagaggaggaaatgaaAGGAGAGGAATCACAAATCCAGAACCTTCTCCAGCTTCCAGTGAGACACAAGATCCCTCTGCAGCACATCCCCAGGAGAGAAGCTACCATCTGTAACGTGGACTCCATGCTCCTGTTCCCGTCAGCTTCCTCTGAGAACCACGTCACCTTCTCCCGGAGCTTCCCTGCTCTTCCAGAACTCTCCGTGTGCCTGTGGCTCCGCGTCGACGTCGGGTACGTAGGAACGCTCCTCTCTTACGCCACGGAAGACAACGACAACAAACTAGTCCTATACGGAcgcaactcctcctcctcctctttctccaccCCCAGCCGAGCAACCCTGGACTTTGTGGTGGGAGACCCTGCGTACCGTGAGCTCCCTGTGGACTCTGTGCTGGACGGGTGCTGGCACCACCTCTGTGTCCTCTGGTCCTCTATCCAGGGACGATTCTGGCACTACACCGACCGGCGCCTGACCTCCGCAGGGTCACGGTTCAGGAAGGGTTACGAGGTGCCGGGAGGGGGGATAGTGGTGCTGGGAGCAGAGCAGGACAGCCAGGGGGGAGGGTTTGATCCCACCGAGGGGTTCGTGGGGCGCCTGGCGGGGTTCACCGTGTGGGACAGGGTGTTGAGTCCTGGGGAGGTGACAGGGGTGGCTATGGGGAGGGGGGTACCCCGGGGGGTGGTGCTCGAGTTGGGGGACGTTGACAGAGTTCATGGGGAGGTGCAGCAGGTAGCCTGCGAGTGCCTGGAACACTGTAGCTGAGACGTCTGATTCCAAACCGACCCTAACCCCTCGTCCCTCGtccctcatccctcatccctcgtccctcatccctcatccctcgTCCCTCATCCCTCGTCCCTCACCCCTCGTCCCTCATCCCTCGTCCCTCGTCCCTCATCCCTCTTCCCTATAGGCACTCCTAGATCTACGGTGCGGTCCTTTAGGGCAGAGTGGGGCTGGTTTTTACTCCTCTGTACTTGATTGATCAATTAAGGTAATTGatttcccctcacctggttgtctaggttttAATTGTGCatcaattaaaaataaataataacaaataacaaCAACCAGCCTGGAGGGGTTTGACTTGGGATTCAGCTGTCTAAATGTTTTAATATCAATCAATTAACTTCCAGGGAGAATGAAGACCGGCAGAACTGCCCTTCGGACTGGATGTGGACCTGGGTTAAAAGAGGAACACTTCAAAATGATGCATGTGAATGAAAGCCATCAATTATTACTTAAAGCAATGTTGTTATATGGCTAAACAAAGACTATTTCACATCATATATATTGTTACCcagcaacagacagagagacagacttacagacagacagacaggtacagacttagacagagagagagacagac

Function

symbol description
ptx4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PTX4 (pentraxin 4).

NR:

description
pentraxin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939596.1 True 2730 mRNA 0.56 5 100674727 100688312

Neighbor

gene id symbol gene type direction distance location
LOC110539066 usp7 coding upstream 50545 100562466 ~ 100624182 (+)
LOC110539064 NA coding upstream 145378 100520662 ~ 100529349 (+)
LOC110515889 LOC105013474 coding upstream 156339 100504433 ~ 100518388 (+)
LOC110512779 abat coding upstream 252904 100357004 ~ 100421823 (+)
LOC110514653 mettl22 coding upstream 322552 100307520 ~ 100352637 (+)
LOC110538858 clcn7 coding downstream 947 100689259 ~ 100749699 (+)
LOC118937852 LOC106606251 coding downstream 76800 100765112 ~ 100809399 (+)
LOC110510646 LOC106603827 coding downstream 611595 101299907 ~ 101605694 (+)
LOC110516410 LOC106581607 coding downstream 659108 101347420 ~ 101390863 (+)
LOC118937611 LOC106603827 coding downstream 884640 101572952 ~ 101579641 (+)
G1133291 NA non-coding upstream 19819 100654690 ~ 100654908 (+)
G1133285 NA non-coding upstream 26572 100647089 ~ 100648155 (+)
G1133283 NA non-coding upstream 28382 100645153 ~ 100646345 (+)
G1133282 NA non-coding upstream 30019 100643975 ~ 100644708 (+)
G1133263 NA non-coding upstream 43309 100628020 ~ 100631418 (+)
G1133311 NA non-coding downstream 40787 100729099 ~ 100729613 (+)
G1133273 NA non-coding downstream 41726 100730038 ~ 100731283 (+)
G1133268 NA non-coding downstream 62813 100751125 ~ 100751557 (+)
G1133272 NA non-coding downstream 67495 100755807 ~ 100756262 (+)
G1133314 NA non-coding downstream 69944 100758256 ~ 100758551 (+)
G1133219 NA other upstream 173282 100501117 ~ 100501445 (+)
G1133209 NA other upstream 197868 100475869 ~ 100476859 (+)
G1133325 NA other downstream 111230 100799542 ~ 100801010 (+)
G1133359 LOC106603827 other downstream 461975 101150287 ~ 101154319 (+)
G1133510 NA other downstream 468681 101156993 ~ 101170260 (+)
G1133665 NA other downstream 1003115 101691427 ~ 101691975 (+)
G1133406 LOC106603827 other downstream 1246905 101935217 ~ 101938656 (+)

Expression

LOC110538862(ptx4) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC110538862(ptx4) Expression in each Bioproject

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LOC110538862(ptx4) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
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Co-expression Network