LOC118937846 (LOC106592354)


Basic Information

Item Value
gene id LOC118937846
gene name LOC106592354
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 101495095 ~ 101509022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939588.1
gagagaaaggaagggggccctgcctctaaaatgagtctctctggggagagagaggaggggggccctgcctctaaaatgagactctctggggagagagaggaggggggccctgcctctaaaatgagaCTCTCTGGGGAACATGACACCAAAGCTAAGAGtccaatcaagcaggagagaccagcctcccctgttcccagctgtgtgtccatgaagagtgaTAAGTCTATGCGTACACCTATAACGTTTAGAGAGGGAGACTTTTCTACTGAACAAAGAAACCAACAGGAGAGATCAGAGTCAGAGATTCTCAGTGGTCAGTCTTCCCAGAGTCATCAAACAGACCTGGCCTCCATATTCAGTttgcttGAAGAGAAAATTATGACATTTGTGAAGAACGAGCTGAAGATGTTCAAGAGGATTCTTAGTCCAGAACTCCCAGAAGGCTTTGAGAGTCAGAAGCAGGATAAGGAAGTGGTGGGTGCTGAAGATGAGAAGCAGGAGAGCagtgccagagagggggctctgaagatcacactgcacatcctgaggaaaatgaaccagaaggagcttgctgacacactggagaaatATGAGCTTGCTGTGATTTGCCAACGTGAACTCAAATCTAATCTAAAGAAGAAGTTTCAATGTGTATTTGAGGGGATCGCTAAACAaggaaacccaacacttctcaataagatctacacagagctctacatcacagagggtggaacaggagaggtcaataatgaacatgagctgagacagattgagacaacaaccaggaaacaagcaagaccagagactgcaatcaaatgtaacgacatcttcaaacccttaactggacaagacaaacctatcagaactgtgctgacaaagggagttgctggcattggaaaaacagtctctgtgcagaagttcattctggactgggctgaaggaaaagcaaatcaggatgtccaatttgtattttcattcccttttcgggagctgaatttgatgaaagaggacaaacACACTTTTATTGAACTTCTCAATCACTTCTCAATGGAAACCAAACAATCAGGAATCTCCATCTACAACAAGTAcaaagttctgttcatctttgatggtctggatgagtgccgactgcccctagacttccagaagaacaagatctgttgggacgtcacagagtcaacctcagtggatgttctgctgacaaatctcatcaagggaaatctccttccctctgctctcctctggataactacccgacctgcagcagccaataagatcccttcagggtgtgttgaccaggtgacagaggtacgagggttcaatgacccacagaaggaggagtacttcaggaagagattcagtgatgaggacctggccagcagaatcatctcacacataaagacatcaaggagcctccacatcatgtgccacattccagtcttctgttggatttctgcaacagtccttgaacacatgctgaaacataagagagaagagatgcccaagactctgactgagatgtacacacaccttgtggagtttcataccaaacagaagaatgaaaagtatcttgggaaagaagagacaggtccacactggaataaagagagcattctgtcactgggaaaactggcttttcaacagcttgtgaaaggcaatctgattttctatgaaGAAGACCTGAAAGAGTCTGGCATTAATGTCAATGAAGCCTCAGTGTACTCAGGATTGTGCACACAGCTCTTTAAAGAGGAATGTGTGCTGTACCAGGACAAGGTATACTGCTTTGTTcatctgagcattcaggagtttctggctgctgtatatgtgttcttctcattcatcaacaacaatgagAATGTAATGGCCAAACCTCAATCAACGTCCAGGAACCTTTCTGTGAGCATCAGACAAAGGCGTAAAGTTGCTTTCTACAAGAGTGCTGTGGATAAAGCCTTACAAAGTGAGACAGGAAACCTGGACcttttcctccgcttccttctgggcctctcactggagtccaatcagaagcACTTACGAGGTCTACTGACAAAGACAAGAAGCAGCTCACAGAGCCATGAAGAAACAGTTGAGTACATCAAGGAGAAGATCAGGGAGAATCCCTCTCAAGAGAGGTgcatcaatctgttccactgtctgaatgaactgaatgaccattctctagtggaggagatccaaAGATACCTGAGCTCAGGAAGTCTCTCAAAACCCAACCTGTCACCtgcacagtggtcagctctggtctttgtgttgctgacttcagaaaaggagctggatgtgtttgacctgaagaaatactccagatcagaggaaggtcttctgaggctgctgccagtggtcaaagcctccagagctgttctgtgagtaaataaaatgacatttaaGAACTAATCATCAGGAAGAAATATTCAGTTTAGAGAAA
>TU1291792
ACAGAGACACTTGTCATCAGGAAGGTTCTCTCTCAACACAACGGAAAATATCTCAATGACTTGACATGTTCTGGTTGTGAATTCAGGCTACAAGgggtcagtgctctaaaatgagtctctctggagCGAGAAAGGAGGggggccctgcctctaaaatgagactctctggggagagaaaggaagggggccctgcctctaaaatgagtctctctggggagagagaggaggggggccctgcctctaaaatgagactctctggggagagagaggaggggggccctgcctctaaaatgagaCTCTCTGGGGAACATGACACCAAAGCTAAGAGtccaatcaagcaggagagaccagcctcccctgttcccagctgtgtgtccatgaagagtgaTAAGTCTATGCGTACACCTATAACGTTTAGAGAGGGAGACTTTTCTACTGAACAAAGAAACCAACAGGAGAGATCAGAGTCAGAGATTCTCAGTGGTCAGTCTTCCCAGAGTCATCA
>TU1291793
GTTAATCACAACCAACatgctggatctctgtttagttgtcactgtgttaaccacaaccaacatgttggatctctgtttagttgtcactgtgttaaccacaaccaacatgttggatctctgtttagttgtcactgtgttaaccacaaccaacatgttggatctctgtttagttgtcactgtgttaaccacaaccaacatgttggatctctgtttagttgtcactgtgttaaccacaaccaacatgttggatctctgtttagttgtcactgtgttaaccacaaccaacatgttggatctctgtttagttgtcactgtgttaaccacaaccaacatgttggatctctgtttaggggtcagtgctctaaaatgagtctctctggagCGAGAAAGGAGGggggccctgcctctaaaatgagactctctggggagagaaaggaagggggccctgcctctaaaatgagtctctctggggagagagaggaggggggccctgcctctaaaatgagactctctggggagagagaggaggggggccctgcctctaaaatgagaCTCTCTGGGGAACATGACACCAAAGCTAAGAGtccaatcaagcaggagagaccagcctcccctgttcccagctgtgtgtccatgaagagtgaTAAGTCTATGCGTACACCTATAACGTTTAGAGAGGGAGACTTTTCTACTGAACAAAGAAACCAACAGGAGAGATCAGAGTCAGAGATTCTCAGTGGTCAGTCTTCCCAGAGTCATCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939588.1 False 2443 mRNA 0.45 5 101495095 101506338
TU1291792 False 505 TUCP 0.50 4 101497715 101509022
TU1291793 True 761 TUCP 0.47 3 101497715 101506764

Neighbor

gene id symbol gene type direction distance location
LOC110519569 LOC106603827 coding downstream 20990 101380799 ~ 101474105 (-)
LOC118937872 NA coding downstream 212722 101271121 ~ 101282373 (-)
LOC110511505 LOC106593326 coding downstream 223997 101154555 ~ 101271098 (-)
LOC118937847 LOC106603827 coding downstream 236884 101253586 ~ 101258211 (-)
LOC118937863 LOC106603827 coding downstream 340941 101148360 ~ 101154161 (-)
LOC118937854 LOC106603827 coding upstream 176160 101682498 ~ 101684312 (-)
LOC110516333 LOC106603753 coding upstream 256774 101763112 ~ 101954471 (-)
LOC118937861 LOC106603827 coding upstream 302547 101808885 ~ 101809452 (-)
LOC110512533 LOC106603753 coding upstream 314425 101820763 ~ 101852176 (-)
LOC118937870 NA coding upstream 521717 102028055 ~ 102099442 (-)
G1134499 NA non-coding downstream 6348 101439089 ~ 101488747 (-)
G1134287 LOC106592354 non-coding downstream 20415 101437772 ~ 101954443 (-)
G1134503 NA non-coding downstream 32707 101461761 ~ 101462388 (-)
G1134288 NA non-coding downstream 48180 101446166 ~ 101451979 (-)
G1134497 NA non-coding downstream 91196 101403443 ~ 101403899 (-)
G1134510 NA non-coding upstream 9464 101515802 ~ 101516783 (-)
G1134517 NA non-coding upstream 39293 101545631 ~ 101576354 (-)
G1134520 NA non-coding upstream 42021 101548359 ~ 101548849 (-)
G1134523 NA non-coding upstream 52403 101558741 ~ 101565001 (-)
G1134524 NA non-coding upstream 52852 101559190 ~ 101564165 (-)
G1134312 LOC106603827 other downstream 406540 101076062 ~ 101088555 (-)
G1134323 NA other downstream 496579 100993810 ~ 100998516 (-)
LOC110518098 LOC106581592 other downstream 545344 100942033 ~ 101130515 (-)
G1134339 LOC106603894 other downstream 553188 100940405 ~ 100941907 (-)
G1134515 NA other upstream 30059 101536397 ~ 101594444 (-)
G1134303 LOC106601187 other upstream 249792 101756130 ~ 101817671 (-)
G1134612 NA other upstream 468311 101974649 ~ 101976006 (-)
G1134325 NA other upstream 726700 102233038 ~ 102233671 (-)

Expression


Co-expression Network