LOC118937611 (LOC106603827)


Basic Information

Item Value
gene id LOC118937611
gene name LOC106603827
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 101572952 ~ 101579641 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936707.1
ATGATATTTGTGAAGAACGAGCTGAAGATGTTCAAGAGTATTCTTAGTCCAGAACTCCCAGAATGCTTTGATTGTCAGAAGCAGGATAATGAAGTGGTGGACACTGAAGATGAGAAGCAGGAGAGCaATTCAGATGAGCTTGCTGTGATTTGCCAACGTGAACTCAAATCCAATCTAAAGAAGAAGTTTCAATGTaagaatgaaaagtatattgggaaagaagagacaggtccacactggaataaagagagcattctgtcactggggaaactggcttttcaacagcttgtgaagggcaatctgattttctatgaaGAAGACCTGAAAGAGGCTGGCATTGATGTTAATGAAGCCTCAGTGTACTCAGGATTGTGCACACAGCTCTTTAAAGAGGAATGTGGGCTGTACCAGGACAAGGTGTACTGCTTCGTAcatctgagcattcaggagtttctggctgctgtatatgtgttcctctcattcatcaacaacaatgagAATCTAATGGACAAACCTCAATCAATGTCCAGGAACCTTTCTGCGCTGTTCAGAGAGAAGCCTAAAGTTACTTTCTACAAGAGTGCTGTGGATAAAGCCTTGCAAAGTGAGACAGGAAACCTGGACcttttcctccgcttccttctgggcctctcactggagtccaatcagaagcACTTACGAGGTCTACTGACAAAGACAAGAAGCAGCTCACAGAGCCATGAAGAAACGGTCAAGTACATCAAGGAGAAGATCAGGGAGAATCTCTCTCCACAGAGGAgcatcaatctgttccactgtctgaatgaactgaatgaccattatctagtggaggagatccaaAGCTACCTGAGATttggaattgtctgtagagccaacctgtcacctgcacagtggtcagctctggtctttgttttgctgacttcagaaaaggagctggatgtgtttgacctgaagaaatactccagatcagaggaaggtcttCTGAGGATGCTGCCAGTGGTCAAAGCCTCCAGAACTGTTCTgctgtcaggctgtctagtcacagaggaaggctgtgcttctctggtctcagctctggagtcaaacccctcacacctgagagagctggatctgagtaacaatgacctgaaggattcaggagtggaGCTGCTTtctgctggactggggaatccccactgtaaactggagactctgaggctgtcaggctgtctagtcacagaggaaggctgtgcttctctggtctcagctctggagtcaaacccctcacacctgagagagctggacctgagctacaatcacccaggagactcaggagtcagactgctctctgctagactggaggatccacactgcagactggagaaactcaatgtggaacatggtggagagaacagaatgaaacctgggcttagaaaatatgtctgtgatctcacactggacccaaacacagtaaacagactcctctctctttctgaggagaacagaaaggtgacatgtaggagagaggagcagccgtatcctgatcacccagagagatttgaggACTATAGacaggtgctgtgtagagagggtctgactgggcggtgttactgggaggtagagtggagtgggagaggggcTGATGTAGGAATGACATATAAAGGAATCAGCAGGAGAGGAGGGCTTGAGGACTGTGGTCTTGGAGCCAATGACAAGTCCTGGAGTCTGTTCTGCTCTGACAACAGCTACACAGCCTGGCATAATAATAATCCCACTACCATAGACGTCCCCTCCTCCAGCCcccacagagtaggagtgtatctggactggctagccggcactctgtccttctatagagcctcctctgacacactgacccacctgatcacattcacctccacattcactgagcccctctatccagggtttaggGTTCAatatgaatcctcagtgtccctggaATAATAaccggagacacacacacactgacacacacaaataTTACAGGAATATTCTGCAAATGTTGATGAAGACGTCACTCAATCTCCCCAAAACAACATGCAGTCTTTCCACAAGACTCCCATGAAGTTATAGTGTGACGTTATGAGTTGACGTTAAAGTAACATTCTCAGAACATACTGcacttgttttatactgttttagatggatcctctgtttatcatcttgttttatactgttttagatggatcctctgtttatcatcttgttttatactgttttagatggatcctctgtttatcatcttg

Function

NR:

description
protein NLRC3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936707.1 True 2246 mRNA 0.46 7 101572952 101579641
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110516410 LOC106581607 coding upstream 182089 101347420 ~ 101390863 (+)
LOC118937852 LOC106606251 coding upstream 763553 100765112 ~ 100809399 (+)
LOC110538858 clcn7 coding upstream 823253 100689259 ~ 100749699 (+)
LOC110538862 ptx4 coding upstream 884640 100674727 ~ 100688312 (+)
LOC110539066 usp7 coding upstream 948770 100562466 ~ 100624182 (+)
LOC110539186 LOC106603753 coding downstream 90768 101670409 ~ 102479291 (+)
LOC118937840 LOC106603827 coding downstream 138148 101717789 ~ 101737160 (+)
LOC118937868 NA coding downstream 390970 101970611 ~ 101987336 (+)
LOC118937844 LOC106603753 coding downstream 1008614 102588255 ~ 102747507 (+)
LOC110516933 LOC106603753 coding downstream 1168293 102747839 ~ 102766589 (+)
G1133626 NA non-coding upstream 34595 101537995 ~ 101538357 (+)
G1133624 NA non-coding upstream 34723 101516129 ~ 101538229 (+)
G1133620 NA non-coding upstream 59893 101510771 ~ 101513059 (+)
G1133601 NA non-coding upstream 63736 101451390 ~ 101509216 (+)
G1133596 NA non-coding upstream 74293 101446859 ~ 101498659 (+)
G1133636 NA non-coding downstream 468 101580109 ~ 101582216 (+)
G1133641 NA non-coding downstream 15468 101595109 ~ 101595785 (+)
G1133643 NA non-coding downstream 30084 101609725 ~ 101610422 (+)
G1133646 NA non-coding downstream 38455 101618096 ~ 101619207 (+)
G1133648 NA non-coding downstream 44878 101624519 ~ 101625132 (+)
G1133510 NA other upstream 402692 101156993 ~ 101170260 (+)
G1133359 LOC106603827 other upstream 418633 101150287 ~ 101154319 (+)
G1133325 NA other upstream 771942 100799542 ~ 100801010 (+)
G1133263 NA other upstream 941534 100628020 ~ 100631418 (+)
G1133665 NA other downstream 111786 101691427 ~ 101691975 (+)
G1133406 LOC106603827 other downstream 355576 101935217 ~ 101938656 (+)
G1133749 NA other downstream 452846 102032487 ~ 102099906 (+)
G1133794 NA other downstream 551487 102131128 ~ 102135084 (+)

Expression

LOC118937611(LOC106603827) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

LOC118937611(LOC106603827) Expression in each Bioproject

Bar chart with 21 bars.
LOC118937611(LOC106603827) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network