G1027606


Basic Information

Item Value
gene id G1027606
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 221386 ~ 224650 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1169762
taattctctccttctctctttctctctctcggaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctgatcatttatgaatatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactattctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttttgttataatctccacccggcacagccagaagaggactggccaccccacatagcct
>TU1169763
taattctctccttctctctttctctctctcggaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctgatcatttatgaatatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccatcccacatatgctctctctaattctctctttctttctctctctcggaggacctgagccctaggaccatgccccaggaatacctgacatgatgactccttgctgtccccagtccacctgactgtgctgctgctccagtttcaactattctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttttgttataatctccacccggcacagccagaagaggactggccaccccacatagcct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1169762 False 503 lncRNA 0.49 2 221386 224650
TU1169763 True 503 lncRNA 0.49 2 221386 224650
Loading

Neighbor

gene id symbol gene type direction distance location
sigmar1 sigmar1 coding downstream 100284 324934 ~ 335596 (+)
katnal2 katnal2 coding downstream 114726 339376 ~ 360451 (+)
LOC110536893 txnl1 coding downstream 692561 917211 ~ 945186 (+)
LOC110517257 tcf4 coding downstream 928338 1152988 ~ 1562821 (+)
cntfr cntfr coding downstream 2307934 2532584 ~ 3047731 (+)
G1027578 NA non-coding upstream 45604 175049 ~ 175782 (+)
G1027561 NA non-coding upstream 77661 140397 ~ 143725 (+)
G1027559 NA non-coding upstream 79533 137000 ~ 141853 (+)
G1027481 NA non-coding upstream 199523 20200 ~ 21863 (+)
G1027654 NA non-coding downstream 120542 345192 ~ 346015 (+)
G1027655 NA non-coding downstream 126079 350729 ~ 351367 (+)
G1027653 NA non-coding downstream 138667 363317 ~ 364835 (+)
G1027683 NA non-coding downstream 175793 400443 ~ 404009 (+)
G1027650 NA non-coding downstream 202072 426722 ~ 430836 (+)
G1027585 NA other downstream 34296 258946 ~ 260057 (+)
G1027677 NA other downstream 167192 391842 ~ 395197 (+)
G1028141 NA other downstream 488214 712864 ~ 713129 (+)
G1028162 NA other downstream 508486 733136 ~ 733454 (+)

Expression

G1027606 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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G1027606 Expression in each Bioproject

Bar chart with 14 bars.
G1027606 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
End of interactive chart.

Co-expression Network