XLOC_029403 (si:dkey-149m13.5)


Basic Information

Item Value
gene id XLOC_029403
gene name si:dkey-149m13.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 59701066 ~ 59709185 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056580
gcACCATTCCAGTGCTGTGATTccactggagaaaggataaagtgtccaaacgcagagaaaaactcctgctgaagcgactgatctccacactgttataaagatgccgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatccgcaggaacaaacagatctgatggtgctgaaagaagagactcatggACAGAATGAAATAGATGAGAAACAGCAGTTTGAGAAACCCCAAGAAATaatgactgatgaaaaacccacactgactaaaaagacttcatcacactgaagacctcggaaatccaaatctgggtgtaatttcagctgtaaacagtgtagtaagagtttcagtcagaagtcaaagcttgatgttcacatgagagttcacactagggagcaaccttacacctgcgaacagtgtggaaagagttttggtcaaatacaaggctttaaagcccacatgagaattcacactggagagaggaagttcacatgccaagagtgtggaaaaagcttttatcatgctggaaactttgcagcacacatgagaattcacactggggagaagcctttcagctgtaagcAGTGTGGAAATAGTTTCTGTCATaagccaaaccttgatgttcacatgagagttcacacaggggagaaaccttacacctgcgaacagtgtggaaggagttttggtcaaaaacaaagctttaatactcacatgagaattcacactggaaagAGGCCGtgcacatgccaacagtgtgaaaAAAGCTTCTATAATGCAAGAAGCCTTGCAgcacacatgagaactcacactggagagaggcctttTAGCTGTATActttgtggaaagagtttcagtctaAAGCTGACCCTGATtgctcacatgagagttcacactagggagaaacctcacatctgcgaacagtgtggaaagagttttggtcaaaaacaagaccttgacatccacatgaggattcacactggagagaaaccttacacatgcacagagtgtggtaaaagtttcccacatataagctcactcaaacaccacattagaactcacaccggagagaagccgtttacatgtgctcagtgtggaaagagcttcacaaccaaaactagcctcaagaaccacatgaatggtcacactggaaccatagtgttcacatgtgatcagtgtggaaagagtctcacacggAAAGACTCCATTAAGAAACACATGAAGATGCACTCAAGAGAGGatcgttttagatgcagtgaatgtggaaagggctttaaaagtaaaagaagcctcaacactcacatgaagcttcacaatggagagcagaaTCCTCAACattgaggccttgtccacacaaacacgggtatattcaaaacggcagcttgTTCATGTAGTTTGTCTGTTCATTCAAGTGaagattatttataaactactttcgagaggatcacatgcttatgattgtcaacggctggtccagcattagctaaaacatgattcaccaatcagatgattcctgactCACTATAGATAACC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094653

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056580 True 1555 mRNA 0.42 3 59701066 59709185
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_029402 NA coding downstream 40647 59658459 ~ 59660419 (-)
XLOC_029401 CR936371.1 coding downstream 63122 59635278 ~ 59637944 (-)
XLOC_029399 znf993 coding downstream 145893 59541396 ~ 59555173 (-)
XLOC_029397 zgc:173720 coding downstream 283565 59339234 ~ 59417501 (-)
XLOC_029398 NA coding downstream 314012 59386587 ~ 59387054 (-)
XLOC_029404 CR936371.2 coding upstream 22087 59731272 ~ 59734314 (-)
XLOC_029405 NA coding upstream 30090 59739275 ~ 59739912 (-)
XLOC_029406 CR846087.1 coding upstream 56864 59766049 ~ 59781405 (-)
XLOC_029407 NA coding upstream 63207 59772392 ~ 59885924 (-)
XLOC_029408 CR846087.3 coding upstream 126687 59835872 ~ 59836867 (-)
XLOC_029394 NA non-coding downstream 526242 59037041 ~ 59174824 (-)
XLOC_029396 BX927122.2 non-coding downstream 536262 59146023 ~ 59164804 (-)
XLOC_029409 NA non-coding upstream 331001 60040186 ~ 60042991 (-)

Expression

Expression of XLOC_029403(si:dkey-149m13.5) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Expression of XLOC_029403(si:dkey-149m13.5) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network