Gene
RNA
| Item | Value |
|---|---|
| gene id | G1029648 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 2852399 ~ 2853206 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: uncharacterized protein LOC106568604 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1172483 | True | 262 | lncRNA | 0.35 | 2 | 2852399 | 2853206 |
2,851,200
2,851,600
2,852,000
2,852,400
2,852,800
2,853,200
2,853,600
2,854,000
2,854,400
2,854,800
2,855,200
2,855,600
2,856,000
2,856,400
2,856,800
NC_048576.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118937614 | NA | coding | upstream | 135405 | 2686828 ~ 2716994 (+) |
| LOC110517257 | tcf4 | coding | upstream | 1289578 | 1152988 ~ 1562821 (+) |
| LOC110536893 | txnl1 | coding | upstream | 1907213 | 917211 ~ 945186 (+) |
| katnal2 | katnal2 | coding | upstream | 2491948 | 339376 ~ 360451 (+) |
| sigmar1 | sigmar1 | coding | upstream | 2516803 | 324934 ~ 335596 (+) |
| il11ra | LOC106568611 | coding | downstream | 242328 | 3095534 ~ 3206784 (+) |
| LOC118937617 | NA | coding | downstream | 768190 | 3621059 ~ 3622127 (+) |
| LOC110536763 | LOC106572512 | coding | downstream | 1283114 | 4136320 ~ 4226240 (+) |
| LOC118937874 | NA | coding | downstream | 1714879 | 4568083 ~ 4569025 (+) |
| LOC110536864 | LOC106568580 | coding | downstream | 1725247 | 4578453 ~ 4797837 (+) |
| G1029637 | NA | non-coding | upstream | 33583 | 2816968 ~ 2818816 (+) |
| G1029629 | NA | non-coding | upstream | 46554 | 2805143 ~ 2805845 (+) |
| G1029627 | NA | non-coding | upstream | 49134 | 2802666 ~ 2803265 (+) |
| G1029586 | NA | non-coding | upstream | 66393 | 2783517 ~ 2786006 (+) |
| G1029609 | NA | non-coding | upstream | 72386 | 2744156 ~ 2780013 (+) |
| G1029649 | NA | non-coding | downstream | 666 | 2853872 ~ 2855663 (+) |
| G1029653 | NA | non-coding | downstream | 8265 | 2861471 ~ 2862834 (+) |
| G1029671 | NA | non-coding | downstream | 38545 | 2891751 ~ 2892648 (+) |
| G1029676 | NA | non-coding | downstream | 47979 | 2901185 ~ 2902746 (+) |
| G1029681 | NA | non-coding | downstream | 64373 | 2917579 ~ 2917980 (+) |
| G1029628 | NA | other | upstream | 48375 | 2803489 ~ 2804024 (+) |
| G1029570 | NA | other | upstream | 181892 | 2669904 ~ 2670507 (+) |
| G1029386 | NA | other | upstream | 407902 | 2443531 ~ 2444497 (+) |
| G1029035 | NA | other | upstream | 964805 | 1887147 ~ 1887594 (+) |
| G1028573 | NA | other | upstream | 1137825 | 1712531 ~ 1714574 (+) |
| G1030609 | NA | other | downstream | 968895 | 3822101 ~ 3822569 (+) |
| G1031335 | NA | other | downstream | 1822300 | 4675506 ~ 4677242 (+) |
| LOC110536873 | inip | other | downstream | 2064337 | 4917485 ~ 4965917 (+) |
| G1031481 | NA | other | downstream | 2284909 | 5138115 ~ 5140739 (+) |
