Gene
RNA
| Item | Value |
|---|---|
| gene id | G1029653 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 2861471 ~ 2862834 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1172488 | False | 499 | lncRNA | 0.45 | 2 | 2861471 | 2862834 |
| TU1172489 | True | 235 | lncRNA | 0.51 | 2 | 2861837 | 2862834 |
2,857,600
2,858,000
2,858,400
2,858,800
2,859,200
2,859,600
2,860,000
2,860,400
2,860,800
2,861,200
2,861,600
2,862,000
2,862,400
2,862,800
2,863,200
2,863,600
2,864,000
NC_048576.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118937614 | NA | coding | upstream | 144477 | 2686828 ~ 2716994 (+) |
| LOC110517257 | tcf4 | coding | upstream | 1298650 | 1152988 ~ 1562821 (+) |
| LOC110536893 | txnl1 | coding | upstream | 1916285 | 917211 ~ 945186 (+) |
| katnal2 | katnal2 | coding | upstream | 2501020 | 339376 ~ 360451 (+) |
| sigmar1 | sigmar1 | coding | upstream | 2525875 | 324934 ~ 335596 (+) |
| il11ra | LOC106568611 | coding | downstream | 232700 | 3095534 ~ 3206784 (+) |
| LOC118937617 | NA | coding | downstream | 758562 | 3621059 ~ 3622127 (+) |
| LOC110536763 | LOC106572512 | coding | downstream | 1273486 | 4136320 ~ 4226240 (+) |
| LOC118937874 | NA | coding | downstream | 1705251 | 4568083 ~ 4569025 (+) |
| LOC110536864 | LOC106568580 | coding | downstream | 1715619 | 4578453 ~ 4797837 (+) |
| G1029649 | NA | non-coding | upstream | 5808 | 2853872 ~ 2855663 (+) |
| G1029648 | NA | non-coding | upstream | 8265 | 2852399 ~ 2853206 (+) |
| G1029637 | NA | non-coding | upstream | 42655 | 2816968 ~ 2818816 (+) |
| G1029629 | NA | non-coding | upstream | 55626 | 2805143 ~ 2805845 (+) |
| G1029627 | NA | non-coding | upstream | 58206 | 2802666 ~ 2803265 (+) |
| G1029671 | NA | non-coding | downstream | 28917 | 2891751 ~ 2892648 (+) |
| G1029676 | NA | non-coding | downstream | 38351 | 2901185 ~ 2902746 (+) |
| G1029681 | NA | non-coding | downstream | 54745 | 2917579 ~ 2917980 (+) |
| G1029702 | NA | non-coding | downstream | 89195 | 2952029 ~ 2953956 (+) |
| G1029703 | NA | non-coding | downstream | 89415 | 2952249 ~ 2954072 (+) |
| G1029628 | NA | other | upstream | 57447 | 2803489 ~ 2804024 (+) |
| G1029570 | NA | other | upstream | 190964 | 2669904 ~ 2670507 (+) |
| G1029386 | NA | other | upstream | 416974 | 2443531 ~ 2444497 (+) |
| G1029035 | NA | other | upstream | 973877 | 1887147 ~ 1887594 (+) |
| G1028573 | NA | other | upstream | 1146897 | 1712531 ~ 1714574 (+) |
| G1030609 | NA | other | downstream | 959267 | 3822101 ~ 3822569 (+) |
| G1031335 | NA | other | downstream | 1812672 | 4675506 ~ 4677242 (+) |
| LOC110536873 | inip | other | downstream | 2054709 | 4917485 ~ 4965917 (+) |
| G1031481 | NA | other | downstream | 2275281 | 5138115 ~ 5140739 (+) |
