G1034557 (sdad1)


Basic Information

Item Value
gene id G1034557
gene name sdad1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 8011959 ~ 8018606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1178729
ACAGTAAATATTTTAATAGAAGGCAGTGTGATTACAGCCTACTACCtaacaagaagaaaaaaaaacaaggacagcAAGATTTAACACGTTAAAATGAACCATTCCCCATCTTCCTTTCACAGCCCAAGTTCAAGGAAGCCATCATTTCCTTAGGAACCAGAGTCCACAGCGACATCGCTATTTGTATTGCTTCTTTCTCTTAATGAGTGCATCTCTTAGAGCAatCTGTTTATCTCTGAAGGATCTCTTGTTCTTGGTCCGTACGTTTCGACTGTGTCTCATCATCCTGAAGTCTTTGTTCCTCTTCTTGTCCTTGTTGCTGGTGGAAGCGAACGGGTTCAgcttctccttcctcttcttcacAAACTCCTTCCTATCCGAGCGATCTTCAACGATCTTCCTCTTCTGTCCCTTGCCCGGGGCAGCGTTGACCTCTTTAGCCATCTGAGCCAGACGGATCTTCTTGAAGTCGTCCTGAGTGAGGAGTCGACTGGAGCTGACCGCTGCTGCCTTGGCCTTCCTCTCTTCTGGATCCATAGTCTTCAGCTTCTCAGCCATTTCCGCTGTGTCTTCATCAGAGGAGTGGTGAACATTGATCCATTCTccgtcctcatcatcatcatcaccaccactgaTACTGCTGGCACTCTCCCAGCCATCACcgtccccctcttctccctcctctttctcctccacctccAGAACCTCTGCTCCAGGGATGTAGGTCTTGGCCCCCATCTCGCCATAGTCCTGGATCTTAGCCTCGGTAGACAACTCTGTGGGTCGACCCCTGTCTCTCTTATGCAGCATCTTTGGATCCAGGCTTCTGAAGAGCTGAATGAGTCCTCTGGCAGACATCATcacatctaaaa
>TU1178731
GAATTATATAAATCATAGGACCGGAGGTAAAATAACAAGAAAACAAGACTGACCTTTCACCGTCATCATCTTCAACGATCTTCCTCTTCTGTCCCTTGCCCGGGGCAGCGTTGACCTCTTTAGCCATCTGAGCCAGACGGATCTTCTTGAAGTCGTCCTGAGTGAGGAGTCGACTGGAGCTGACCGCTGCTGCCTTGGCCTTCCTCTCTTCTGGATCCATAGTCTTCAGCTTCTCAGCCATTTCCGCTGTGTCTTCATCAGAGGAGTGGTGAACATTGATCCATTCTccgtcctcatcatcatcatcaccaccactgaTACTGCTGGCACTCTCCCAGCCATCACcgtccccctcttctccctcctctttctcctccacctccAGAACCTCTGCTCCAGGGATGTAGGTCTTGGCCCCCATCTCGCCATAGTCCTGGATCTTAGCCTCGGTAGACAACTCTGTGGGTCGACCCCTGTCTCTCTTATGCAGCATCTTTGGATCCAGGCTTCTGAAGAGCTGAATGAGTCCTCTGGCAGACATCATcacatctaaaa
>TU1178728
ACAGTAAATATTTTAATAGAAGGCAGTGTGATTACAGCCTACTACCtaacaagaagaaaaaaaaacaaggacagcAAGATTTAACACGTTAAAATGAACCATTCCCCATCTTCCTTTCACAGCCCAAGTTCAAGGAAGCCATCATTTCCTTAGGAACCAGAGTCCACAGCGACATCGCTATTTGTATTGCTTCTTTCTCTTAATGAGTGCATCTCTTAGAGCAatCTGTTTATCTCTGAAGGATCTCTTGTTCTTGGTCCGTACGTTTCGACTGTGTCTCATCATCCTGAAGTCTTTGTTCCTCTTCTTGTCCTTGTTGCTGGTGGAAGCGAACGGGTTCAgcttctccttcctcttcttcacAAACTCCTTCCTATCCGAGCGATCTTCAACGATCTTCCTCTTCTGTCCCTTGCCCGGGGCAGCGTTGACCTCTTTAGCCATCTGAGCCAGACGGATCTTCTTGAAGTCGTCCTGAGTGAGGAGTCGACTGGAGCTGACCGCTGCTGCCTTGGCCTTCCTCTCTTCTGGATCCATAGTCTTCAGCTTCTCAGCCTGGGCGAGACACATACAATAGCCAATGAGAAGACGTTATTCGCCAATCAGAACACTAAtcaccagggttgtgttcattcggAACTAAATGGCAGAAAACggacagaaacagggagagacaacCTTAACCTGTCCAATAATAAGTGCTCATTTTAGTTTTCTGATAAAAattgttttgctacggtgtgctcAATTGAAC

Function

symbol description
sdad1 Predicted to be involved in ribosomal large subunit biogenesis and ribosomal large subunit export from nucleus. Predicted to act upstream of or within actin cytoskeleton organization; protein transport; and ribosome biogenesis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in ovary. Orthologous to human SDAD1 (SDA1 domain containing 1).

NR:

description
protein SDA1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1178729 False 872 lncRNA 0.49 6 8011959 8018606
TU1178731 False 555 lncRNA 0.51 4 8011959 8013301
TU1178728 True 754 lncRNA 0.45 3 8012865 8018606

Neighbor

gene id symbol gene type direction distance location
LOC110536909 LOC106568505 coding downstream 30756 7978843 ~ 7981203 (-)
LOC101268972 LOC101448022 coding downstream 111044 7898867 ~ 7900915 (-)
stbd1 stbd1 coding downstream 160351 7837607 ~ 7851608 (-)
LOC110523118 LOC106572051 coding downstream 190441 7645369 ~ 7821518 (-)
LOC110536901 LOC106568527 coding downstream 398624 7606957 ~ 7613335 (-)
LOC110536914 LOC106568507 coding upstream 109242 8127848 ~ 8205393 (-)
LOC100136343 LOC100136343 coding upstream 227404 8246010 ~ 8252914 (-)
LOC118937621 NA coding upstream 259935 8278541 ~ 8288538 (-)
ptpn13 ptpn13 coding upstream 272945 8291551 ~ 8460671 (-)
arhgap24 arhgap24 coding upstream 575723 8594329 ~ 8809553 (-)
G1034551 NA non-coding downstream 19334 7992414 ~ 7992625 (-)
G1034547 NA non-coding downstream 28142 7983543 ~ 7983817 (-)
G1034545 NA non-coding downstream 36472 7975190 ~ 7975487 (-)
G1034544 NA non-coding downstream 47541 7963257 ~ 7964418 (-)
G1034520 NA non-coding downstream 61012 7947665 ~ 7950947 (-)
G1034563 NA non-coding upstream 14578 8033184 ~ 8033490 (-)
G1034564 NA non-coding upstream 15331 8033937 ~ 8034231 (-)
G1034566 NA non-coding upstream 20649 8039255 ~ 8039590 (-)
G1034592 NA non-coding upstream 55064 8073670 ~ 8073940 (-)
G1034561 NA non-coding upstream 81083 8099689 ~ 8100359 (-)
G1034443 yo84 other downstream 177381 7827880 ~ 7834578 (-)
G1032941 NA other downstream 1811625 6197017 ~ 6200334 (-)
G1032314 NA other downstream 2228595 5782940 ~ 5783364 (-)
LOC110536877 mob3b other downstream 2467451 5538381 ~ 5607736 (-)
G1034667 NA other upstream 260733 8279339 ~ 8279866 (-)
G1035160 NA other upstream 817650 8836256 ~ 8838834 (-)
hcn1 hcn1 other upstream 999901 9018507 ~ 9206417 (-)
G1035717 NA other upstream 1514894 9533500 ~ 9548135 (-)
LOC110536932 NA other upstream 1667423 9684834 ~ 9696461 (-)

Expression


Co-expression Network