XLOC_002946 (dnajb13)


Basic Information

Item Value
gene id XLOC_002946
gene name dnajb13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36673387 ~ 36682522 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005435
ACATCCGACAACAATAATCTAACAGGTGGACGCTATTCGTACTGAGTTTTTGTCTCTTGAATCATTTAAAGTGTAGGATTAAATAAACACGCGATGGGCAGAGACTATTACGCTATTTTGGAAATAAACCGCAACGCCATTGATGCAGACATAAAGAAGGCGTACCGGCGGCTCGCACTGAAGCATCACCCGCGCAGCAACAGCCACGCGCGCGCCGCCGAGCGCTTCAATCTGCTGGCGGAGGCGTTTGACGTGCTGAGCGACCCACGTAAAAAGGCCACTTATGATAAGTTTGGGGAGGAGGGTTTGAAAGGAGGAATCCCATCTGAGCTGGGAGTGAACAGCGCCTGGTCATCGGGATACGTCTACCATGGAAATGCAGATGAAACATTTCGACAGTTTTTCGGAGGAGATAATCCTTTTGCAGATTTCTTCACTGGTGATGGCAATGAGGTCAACACGGCTTTTGAGAGCTTGCGTGGACGGAAAGAAAAGCTTCAGGATCCACCAATAGAAAGAGATCTTCATCTCGCATTGGAGGACCTTTATTATGGATGCACTAAAAAGATTAAGATATCCCGCAGGGTCATGAATGAAGACGGACACACATCCAGCATCAGGGACAAAATTTTAACCTTCACTGTAAAAGCAGGATGGAACGAAGGGACACGGATCACGTTTCCTAAAGAGGGAGATCAGGGGCCAAACAACATCCCAGCAGATATTGTTTTTGTCATACGGCAAAAGAATCACCCACGCTTTGTCCGCCAAAATGACGATCTGTTCTATACAGAGCATATCTCACTTGAGAAGGCTTTGACCGGTTTCTCAGTAGAAGTTGAGACACTAGATGGCAGGCTTCTCAACATCCCCATTAATGACATTGTGCACCCTCAGTACACCAAGGTTGTGAGTGGAGAGGGAATGCCGTTATCCAACAGCCCATCCAAGAGAGGAGACCTGATCATTCGCTTCATTACACATTTCCCAGAGAAACTctcagctgaaaagaaaaaaCTCCTAAGAGGAGCGCTCTCAACGAAAGTCATCCACTCTTCCTAAAGGGCAGTCATTCATGAATTAAACACTTTCACTCAAGAAACAAGCAAACAA
>TCONS_00005436
ATAGCAACATCCGACAACAATAATCTAACAGGTGGACGCTATTCGTACTGAGTTTTTGTCTCTTGAATCATTTAAAGTGTAGGATTAAATAAACACGCGATGGGCAGAGACTATTACGCTATTTTGGAAATAAACCGCAACGCCATTGATGCAGACATAAAGAAGGCGTACCGGCGGCTCGCACTGAAGCATCACCCGCGCAGCAACAGCCACGCGCGCGCCGCCGAGCGCTTCAATCTGCTGGCGGAGGCGTTTGACGTGCTGAGCGACCCACGTAAAAAGGCCACTTATGATAAGTTTGGGGAGGAGGGTTTGAAAGGAGGAATCCCATCTGAGCTGGGAGTGAACAGCGCCTGGTCATCGGGATACGTCTACCATGGAAATGCAGATGAAACATTTCGACAGTTTTTCGGAGGAGATAATCCTTTTGCAGATTTCTTCACTGGTGATGGCAATGAGGTCAACACGGCTTTTGAGAGCTTGCGTGGACGGAAAGAAAAGCTTCAGGATCCACCAATAGAAAGAGATCTTCATCTCGCATTGGAGGACCTTTATTATGGATGCACTAAAAAGATTAAGATATCCCGCAGGGTCATGAATGAAGACGGACACACATCCAGCATCAGGGACAAAATTTTAACCTTCACTGTAAAAGCAGGATGGAACGAAGGGACACGGATCACGTTTCCTAAAGAGGGAGATCAGGGGCCAAACAACATCCCAGCAGATATTGTTTTTGTCATACGGCAAAAGAATCACCCACGCTTTGTCCGCCAAAATGACGATCTGTTCTATACAGAGCATATCTCACTTGAGAAGGCTTTGACCGGTTTCTCAGTAGAAGTTGAGACACTAGATGGCAGGCTTCTCAACATCCCCATTAATGACATTGTGCACCCTCAGTACACCAAGGTTGTGAGTGGAGAGGGAATGCCGTTATCCAACAGCCCATCCAAGAGAGGAGACCTGATCATTCGCTTCATTACACATTTCCCAGAGAAACTctcagctgaaaagaaaaaaCTCCTAAGAGGAGCGCTCTCAACGAAAGTCATCCACTCTTCCTAAAGGGCAGTCATTCATGAATTAAACACTTTCACTC
>TCONS_00005437
CGTGTCCATAGCAACATCCGACAACAATAATCTAACAGGTGGACGCTATTCGTACTGAGTTTTTGTCTCTTGAATCATTTAAAGTGTAGGATTAAATAAACACGCGATGGGCAGAGACTATTACGCTATTTTGGAAATAAACCGCAACGCCATTGATGCAGACATAAAGAAGGCGTACCGGCGGCTCGCACTGAAGCATCACCCGCGCAGCAACAGCCACGCGCGCGCCGCCGAGCGCTTCAATCTGCTGGCGGAGGCGTTTGACGTGCTGAGCGACCCACGTAAAAAGGCCACTTATGATAAGTTTGGGGAGGAGGGTTTGAAAGGAGGAATCCCATCTGAGCTGGGAGTGAACAGCGCCTGGTCATCGGGATACGTCTACCATGGAAATGCAGATGAAACATTTCGACAGTTTTTCGGAGGAGATAATCCTTTTGCAGATTTCTTCACTGGTGATGGCAATGAGGTCAACACGGCTTTTGAGAGCTTGCGTGGACGGAAAGAAAAGCTTCAGGATCCACCAATAGAAAGAGATCTTCATCTCGCATTGGAGGACCTTTATTATGGATGCACTAAAAAGATTAAGATATCCCGCAGGGTGCGTTCTGTCCACAGTGgcacaaataaaatgtatatatggaTGATATATTCAGTTTCAGTGAAGACTTGTGTTTGCTACAGGTCATGAATGAAGACGGACACACATCCAGCATCAGGGACAAAATTTTAACCTTCACTGTAAAAGCAGGATGGAACGAAGGGACACGGATCACGTTTCCTAAAGAGGGAGATCAGG
>TCONS_00005438
TAGCAACATCCGACAACAATAATCTAACAGGTGGACGCTATTCGTACTGAGTTTTTGTCTCTTGAATCATTTAAAGTGTAGGATTAAATAAACACGCGATGGGCAGAGACTATTACGCTATTTTGGAAATAAACCGCAACGCCATTGATGCAGACATAAAGAAGGCGTACCGGCGGCTCGCACTGAAGCATCACCCGCGCAGCAACAGCCACGCGCGCGCCGCCGAGCGCTTCAATCTGCTGGCGGAGGCGTTTGACGTGCTGAGCGACCGTATGTTCACAAGACAGTGACAGGCCACAATTTACATtcacaaaacacacatgcaaCCCACAACTGCTGTAGAATATGCTTACTAAAACGTTTTATTACAACGGAACGGATTTATCTATGTATCTTTGTAAACATTATGTCGGTCCCAGAAAGTTCTGAGCCCAAAACGCTGTGTATACAATATGGTTTGCGACTAAATCTGCTTCTAAAAAGAGCGTGCATATGAATGCTTTCCAGTAGGACCAAAATACATGAATATTTGGAGTACATAGTGGGACAGAATTTGTAACATATAGagctaaatattattaaaatttatttatacctTGCATATACATTTATCCGCCACTTTTTTACACCTTCCAACTAGGTTGGGCCCCCTTGGTCACAAAGCACAATTATAACATCATTTCTGTCATCACCCTCATGTCTGTTCAATCCTTTGAGACCTTTGTTTATCTTCTggacacaa

Function

symbol description
dnajb13 Predicted to enable chaperone binding activity and unfolded protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding. Predicted to act upstream of or within protein folding. Predicted to be active in cytosol. Is expressed in Kupffer's vesicle; nervous system; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 34. Orthologous to human DNAJB13 (DnaJ heat shock protein family (Hsp40) member B13).

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0005829 cytosol cellular_component
GO:0051082 unfolded protein binding molecular_function
GO:0051087 chaperone binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-040910-4 Predicted to enable chaperone binding activity and unfolded protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding. Predicted to act upstream of or within protein folding. Predicted to be active in cytosol. Is expressed in Kupffer's vesicle; nervous system; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 34. Orthologous to human DNAJB13 (DnaJ heat shock protein family (Hsp40) member B13).

Ensembl:

ensembl_id ENSDARG00000043157

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005435 False 1113 mRNA 0.46 8 36673387 36682509
TCONS_00005436 False 1102 mRNA 0.47 8 36673404 36682515
TCONS_00005437 False 796 lncRNA 0.47 4 36679548 36682522
TCONS_00005438 True 742 processed_transcript 0.42 2 36681652 36682514

Neighbor

gene id symbol gene type direction distance location
XLOC_002945 AL845435.1 coding downstream 10776 36654197 ~ 36662611 (-)
XLOC_002944 NA coding downstream 22483 36642166 ~ 36650904 (-)
XLOC_002943 rsf1b.1 coding downstream 39461 36613004 ~ 36633926 (-)
XLOC_002942 NA coding downstream 62486 36595380 ~ 36610901 (-)
XLOC_002941 slc1a3b coding downstream 80901 36558804 ~ 36592486 (-)
XLOC_002947 mrpl48 coding upstream 1478 36684000 ~ 36691681 (-)
XLOC_002948 pimr137 coding upstream 37644 36720166 ~ 36726188 (-)
XLOC_002949 PLEKHB1 coding upstream 48517 36731039 ~ 36738642 (-)
XLOC_002950 dhrs13a.2 coding upstream 102234 36784756 ~ 36793412 (-)
XLOC_002951 dhrs13a.1 coding upstream 113339 36795861 ~ 36808348 (-)
XLOC_002939 NA non-coding downstream 203492 36465343 ~ 36469895 (-)
XLOC_002926 BX088524.4 non-coding downstream 510093 36163179 ~ 36163294 (-)
XLOC_002955 BX323076.2 non-coding upstream 358556 37041078 ~ 37042232 (-)
XLOC_002957 CT573231.1 non-coding upstream 669958 37352480 ~ 37357303 (-)
XLOC_002958 NA non-coding upstream 735712 37418234 ~ 37476245 (-)
XLOC_002960 NA non-coding upstream 1046789 37729311 ~ 38025967 (-)
XLOC_002961 NA non-coding upstream 1182897 37865419 ~ 37889561 (-)

Expression


Co-expression Network