G1039917


Basic Information

Item Value
gene id G1039917
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 13734818 ~ 13736875 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1185135
ACCCATGGCTGTGTCCTTACCCATTCATAtcaaattcatagattagggcctaattattttaatttactgatttccttatatgaagtgtaactcagtaaactagtggaaattgttgcatgttgcttttatatttctGTTTAGTATAATTCACAAAAAGTATACTAGTCAACTTGAAGATCTTTCTTAAGATCTTTAGTTTTTTTATGTGGGAAATGGTAGCCAGTATGTAATTCAAAAGAAGGTCTGAAATACTGTCAAGGCATTGGATCATTCTTGACAGGGTCATATCTCTTTATATGGTTCTGTTTCTTGATACTTGAGGTCATTTAAGGTATCCTAGCAACCTGACACAATGAAAGAATTGATGGAGTGAACACCCATGTCCTTATTTAGCCTTTATTGTCCATGTTGCCAAGTGGAATTATGCATAAATTATGTAGATACACAGTAGAACTTCAGAATAGACTCGAAGCCACTAAAGCAAACTGCTAAATGTCGATTTCTTCTTCCAGTATAAACACAGACACGTTCCTGCCCTTCCAGATTATAACAAGACCATCTGTAACAAATGTACAAATTGATCTTGATAGGTATAAATGAATTAGAAAAAAAAGGCAGCTTGAAGAGTTTGGCTAtcaggagatatatatatatatatacacacacacacaaatgtggtAGATACATTAATATAAATACAACAATATGTTCAGGTATTGGTATACTTCTCTCTAAAAAGACTAAACGTATCCAAGATATCCTAAAGATCTAGAGCTCAGAAAACTCTTGAGATATACCTGTGGCCACATGGACAGTCTGGTAACCACGACAACTAGGTGGGGCACCCCAAAGGGTAAGTTTAACCCTTAGGGGGTGTAAGAAATTACTTAATGTCATCAGAAGGGGACAACAGTCACAGATGATTGACAAcactgctaataataataatgattgaCAGCATTTTGAGGCACTTCTAGACAACACGAGGTGTTCTGACTGACAACTGAACTCATTCCCCACCAGTAGATGCAGCCAATAAAAGTTACATTGGTAAGAAGCAAAGAAATGTACATGAACagctttgacatgtttctatcaTCTCTCTGAGTAGCGAGTCTGTATAACCAACCTGTAACCTTtgacctgtgtgagtgtgtgtgttcttacattCAAAGGTGACAATAACAACATTAAAAAAGAAACACGTCATCACTGTACATGAAACAGACACATACTTTACACACAGTCCACTGTGAAGGCCTTGTACTATCATTTGTAAATCCTCCAGACAGACTTCATTGACTTCAGTATCGTGCAAACTGCATTCAATTTCACACTATACTGTTTCTTACACACAGAGGGACAGGAGTTTTGGCCCCAGTAAAAAGGTAATACTATCAAATTACTAAAATACTCAATTAACATCTAAAGTTTATTCTCCACAATATGCATTTAAGTGAATCAACAGTGAGAGAAAGCTTTCAATTCAACTATTAACATTTAGTCTCTATCTCTTCTTACTGTGTATTGAGAGAGTCCACCTGTGAATCAATGGTGTGGAGCtaagcaaaaaaatatatttcaaaaaaatactGCAACTTGGTTTAAGATGTTTGTGAAGACACTTTTAAAGGTTTGGCTTTAAAACACATCTCAAGGCCTTGAAGTCAAAACATTTGTCACAGACAAGTAAGTGTTGTAGGACTAAACCATTGAGCATGACGCAATACATATTCCAGTTATTCTAAACTACATACAGTCTAGTAGCAATGTACAACTATCAGTCATCAAAAGGACAAGAACAATCACAAGTGAATCATGAGATTGATAATAAAGCATTAGTGGCAAACTGATGTTCTGTATGTCTTAAATACAGATATTTCTTTTGAGTGAAGGCAAGGCATTACATTTCCAACATGATGAGTGCCTTTTCAGTAGTGCTGAGAGATTAGTGCCTTTTGAGGTCTGTTCAGTTTCggttcgtttaaaaaaaaaactaatcaCGGTCTTCAATTTcagtttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1185135 True 2024 lncRNA 0.36 2 13734818 13736875

Neighbor

gene id symbol gene type direction distance location
LOC110537001 LOC106568395 coding downstream 68063 13661468 ~ 13666755 (-)
LOC110537000 LOC106568392 coding downstream 123334 13595690 ~ 13611484 (-)
LOC110536997 LOC106568391 coding downstream 142299 13578721 ~ 13592519 (-)
paqr3b LOC106568390 coding downstream 163798 13566223 ~ 13571020 (-)
LOC110536995 LOC106568389 coding downstream 180061 13521275 ~ 13554757 (-)
LOC110537003 LOC106568398 coding upstream 9006 13733254 ~ 13756690 (-)
LOC110537004 LOC106568399 coding upstream 29506 13766381 ~ 13806904 (-)
LOC110537005 LOC106568400 coding upstream 74509 13811384 ~ 13887135 (-)
dhx29 dhx29 coding upstream 254482 13991357 ~ 14016553 (-)
plpp1a plpp1 coding upstream 346464 14083339 ~ 14108194 (-)
G1039919 NA non-coding downstream 2645 13731755 ~ 13732173 (-)
G1039941 NA non-coding downstream 10467 13724125 ~ 13724351 (-)
G1039937 NA non-coding downstream 16596 13717995 ~ 13718222 (-)
G1039936 NA non-coding downstream 17697 13716890 ~ 13717121 (-)
G1039934 NA non-coding downstream 18571 13716047 ~ 13716247 (-)
G1039951 NA non-coding upstream 21692 13758567 ~ 13758811 (-)
G1039952 NA non-coding upstream 22835 13759710 ~ 13759939 (-)
G1039954 NA non-coding upstream 27186 13764061 ~ 13764467 (-)
G1039955 NA non-coding upstream 28015 13764890 ~ 13765189 (-)
G1039966 NA non-coding upstream 60127 13797002 ~ 13797533 (-)
G1039504 NA other downstream 379023 13355300 ~ 13355795 (-)
LOC110536986 LOC106568381 other downstream 412102 13321118 ~ 13324415 (-)
G1039364 NA other downstream 558375 13147658 ~ 13176443 (-)
G1039366 NA other downstream 582511 13151021 ~ 13152307 (-)
G1038943 NA other downstream 1013664 12720501 ~ 12721154 (-)
G1040300 NA other upstream 441783 14178658 ~ 14180141 (-)
G1040432 LOC106568413 other upstream 570725 14307600 ~ 14311052 (-)
G1042500 NA other upstream 2367288 16104163 ~ 16104883 (-)
LOC110537059 LOC106568318 other upstream 2588088 16324956 ~ 16328168 (-)
LOC110537061 LOC106568319 other upstream 2796742 16417638 ~ 16549073 (-)

Expression


Co-expression Network