G1040975



Basic Information


Item Value
gene id G1040975
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 14670057 ~ 14672944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1186266
TTCCTTACAATCCTTTACACATATATGGTGTATCATGATTTGTTTAAAGTGCATCAAAAACATGTTTCTCATTCAACACTATTCAATAACTGATCAATTTGAAATTTATTGAACAGGATATACTTGTTAATCAAAACAACCTGAATATAATCACCAATAAGCATCATTCCATTATAGTTACATTGAGTAGTGTTCAGTTCAATCCCAACCAtgtgtaatgtaaaaaaaaagtgaaacTAAAGACCCCCAAAAAGAATAAACCTTTAATACCCCTCAAACTTCAGTTATGCCAACATGCCCATTACTGTATAGTTAGCACTTTGTTTCTTCAAAATGACAGTATACACAGCTTGTCCCAGAAAGCAAAATGAATGCCTTCACACCTCCGATTGGATCTATTCCCAGGCATATTGACACTCTGCTTTGCATGACAAAATACCACAGGGATGTGAAGAGTAGGTAGTATAGGTTTTTATACTCATTAGGCAGACTCAATATGCTGTTTCTGTCCATAGGTATTTTAGATTGGACTCTCTGTGGTCCTATAATCCATGAAATGTTCTAGTATCCTGCCCTAAAACATACCAACATGGGAGTGTGAGGGTTTTTAAACTGAATAAAGGGATACTAGGCGGAGACTCAATATCAGCTATCCATTTGTTTCTGTCCATGGGTATTTTAGACTGTACTCTCTGTGGGCTTATTATcagaggttgtgtcccaaatggtaccctaatccctatatagtgtactacttcttTTTACTGGTCaagggctccagagtggcgcagcggtctaaggcactgcatctcagtgctagaggtgtcactacaaaccctggttcgataccaggctgtatcacaaccgtctgtgattgggagtcccataagtaagcgcacaattggcccagcgtcgtccaggttaggggagggtttggctgggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaatattgtGCAGCGGCATTACTGTGACTGTGAGGGCTGTAGAAAAACCTCCGTAAGGTCACCTGTCTCCAACCAACATCTAGTAGATTCATACAATGTTTAATGCTTGGGAACCAACTAACACAGAGAGCAGAGCAGTGTTTGTGTGATGAACAGCAACTGATGACGACaatcctctcctctttaccttcctgATCTAGTCTGTACCGCTGTTTGAACCGAATGAAGACACGCATGCTGACAGATAGACAGGTTGGCATTCATCAgatccatctcctcttctctgacTCTGTCAGCGTGTCTCAGATGAACTTCCTCTGATTATCATTCTGCTTCCTATGAATCACCAATCCCAccaaacctgtctgtctgtctgacaaacCAAACTGGGTATTCTCATAAAGATTAGCACCTTGTGAAAGGAAGGTTGTGATTAGCCAGAGTGTTTTTGAGTGAGCCTAATGTTGTGAGTTCCGTTCAAAGCTTTTCTGAGAATTGGGTCTGTCAAAGTGTTCTAGCTGTGGGTGGTAAGGAAGCAGTGTTTCAAAGAAAACCGTTAAATGGCTAtgcttttattttttatcaaggaTAATGCAGAGCAAGCACACAAAATTACAGGTTATGCTTGCCACGGAACTTTCTGAAGTACAGtgaagtaaaaaaacaaaaaaacatttggaacataaaactgtatttacaTAAATTTTGTCAGTGGGATGTTCGATTCGAATATGTTTGTTCAATACATGTTCTCATGTATTTTGGTCAACAGATTCTGAGATGTTATTACTGTAGAGGTAATCTCTATGGCTAAGACATCTAAATCTCTCAATAAAGCAATTGCATCATCATAATACCAAAATACTTTCAACTCAATAATCCAAACATGTATTGTATCATCTTCATAACCGTACTGCaagtacatacagtataaatCCATCCAGGCATTATTATATTTTCAGTACTGTACCACCGGAGAGGAATATTAGACAGCGATTGTTATAAAGACATGAATTAATTCAACATTTACATTTTCAAATAATATTTACACTCCCATGAATGACAGTATCAACACCTTTCAAAGTCTATCATCTACACTTGTGTCATATTACCAGTACAAACAGTGTGTACAAAAAACAGTAAACAATATGTGGTCATCACTAGTtactacagccacaaagtcataaacccagTCTATTGCTACAATTTCTCTAAAATATAATGTCaaacgtaaccctaaccttaacccaatccttaactacactgctaaccttatgcctaaacctaaccttaaattaagaccgaAAAGCAAACTTTAGTTTCCATTATTGtttacgatatagccaattttggttttgtggctgtggtaactactTGAAACCACAATACATGGATGCATTTACAGATTATTTGTTGTCTTCTTCAAATCTTGGTCCGCCATCATGTTTTGACAGTTGCTGATGGTCTTTTACtgcatgtactgtgtgtgtaatgtactgtGAACGTAATTAACGTCTCTAGGTCTTGTCAAGGCTTGTCCTTCCTTAATCAGATTCATTGGATTAGTCCAACATCGAGAAGGTCGAGATGTGGATAGTTTGACTTAAATGAAATACTCCTTTTGGTTTTCACTTAGTATGTTCTGTGAGTTGGGCTCGCTGTGGAAAGGGTATTCAGGACTGTCGGCCTCAGGTTTGATTCCCTGGGGTTCTTGGGTGTGGAATGTCTCTTTCCGTCGATACAGGAACCTTGCCATTATTGCCAACGCACACAGAATCACAAATATCACCACAG

Function


NR:

description
contactin-associated protein-like 4

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1186266 True 2785 lncRNA 0.39 2 14670057 14672944

Neighbor


gene id symbol gene type direction distance location
tdgf1 LOC106568419 coding downstream 417109 14249910 ~ 14252948 (-)
zmp:0000001301 LOC106568410 coding downstream 456481 14198158 ~ 14213576 (-)
LOC110537014 LOC106568411 coding downstream 472030 14180403 ~ 14198027 (-)
LOC110537010 LOC106568408 coding downstream 514729 14120153 ~ 14155328 (-)
plpp1a plpp1 coding downstream 561863 14083339 ~ 14108194 (-)
LOC110537020 LOC106568373 coding upstream 156677 14829621 ~ 14831545 (-)
c3ar1 c3ar1 coding upstream 196795 14869739 ~ 14875572 (-)
LOC110537021 LOC106568367 coding upstream 223404 14896348 ~ 14946975 (-)
LOC110537023 NA coding upstream 397128 15070072 ~ 15075473 (-)
LOC110537026 LOC106568365 coding upstream 412973 15085917 ~ 15096696 (-)
G1040863 NA non-coding downstream 155469 14491274 ~ 14514588 (-)
G1040597 NA non-coding downstream 238124 14431720 ~ 14431933 (-)
G1040593 NA non-coding downstream 242784 14426469 ~ 14427273 (-)
G1040534 NA non-coding downstream 280234 14389603 ~ 14389823 (-)
G1040509 NA non-coding downstream 293968 14375862 ~ 14376089 (-)
G1041048 NA non-coding upstream 118884 14791828 ~ 14792037 (-)
G1041049 NA non-coding upstream 121003 14793947 ~ 14794188 (-)
G1041131 NA non-coding upstream 183108 14856052 ~ 14856278 (-)
G1041132 NA non-coding upstream 183727 14856671 ~ 14856898 (-)
G1041138 NA non-coding upstream 187673 14860617 ~ 14861126 (-)
G1040432 LOC106568413 other downstream 359005 14307600 ~ 14311052 (-)
G1040300 NA other downstream 489916 14178658 ~ 14180141 (-)
G1039504 NA other downstream 1314262 13355300 ~ 13355795 (-)
LOC110536986 LOC106568381 other downstream 1347341 13321118 ~ 13324415 (-)
G1039366 NA other downstream 1517750 13151021 ~ 13152307 (-)
G1042500 NA other upstream 1431219 16104163 ~ 16104883 (-)
LOC110537059 LOC106568318 other upstream 1652019 16324956 ~ 16328168 (-)
LOC110537061 LOC106568319 other upstream 1860673 16417638 ~ 16549073 (-)
LOC110537077 LOC106568284 other upstream 2392377 17065241 ~ 17068020 (-)
G1044482 NA other upstream 3023185 17696129 ~ 17697105 (-)

Expression



Co-expression Network