G1041932 (LOC100136130)


Basic Information

Item Value
gene id G1041932
gene name LOC100136130
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15053224 ~ 15138711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1187362
TCAATAAAAGGTCAAACTTTATTGGCAATGTTGATTTGTAAAACAGAACTACTTCAAGGAATACGTTGATACAGTTTTTAATATTAAAAAAtgacatatgtgtgtgtgtctggcgcgTGCGTGTggatgtgtttgcgtgtgtgtatgagtgtgagtGCGTGAGCGAACATGTGTATAAGATGCATTAACTCCTCTTTGTCTACATGTATGGGGTTCCGTTAGTTATGCTGTGTcatcatagtgttctgtatgaGTGTGCTCAGCAGTAGTCTTCAGTGACTATGTCTCCCCTGCAGGTGGCATCAGAAAGGCCCTGTGTGTTACAGCTGCGGGTCCTTATACGTTTTCCTCCACTGCAGCCTGACCAGGCTGCCCAACACGACCAGTTCCCCTCCTGAGGAACACTCTCCACGGGGGTTTTAGTATTCTTATCTGGAGAAGAAAACTATATTTTCAGCTTGACAGCTTTAACTATATACATAGGACAGTGTGCTTGTGCGTGCATACATGCTTGGGCATGCGTGTGTATACAACGGCTGGCTCCACTCACTGTTATCAGCCTTGGCATCCTGGCAGGCCAGACCTTCAAACTggggcagacagagacacaggcacTTCCCATCCAGCAGGGCCAGAGAGCCCCCGTTGTGACAGGGCTTACACTTGCACACACTGTACTCAGCCTCGTACTCCTGAGTGGCTCTCTGCATGTTAAGCCTCCTGGTGTTCGCATCAGGCATACTCAGTGGGATCAGGGTCTGAATGGGTTCTCTCACTGCTGAGGAGTGCAGGGGCATCGCCCACTGTCCGGGCCCAGTTCTGATAGGTCGTCACGTCCATTAGCCCCTCCTTCGTTATCTGGGTTCTCATGGCGACAGCGGCCTCCAGGGTTCCGCCCCTGACTAGAGTTATCACCTTATCCACCAGCGCCTTGCCCTCCTTCTCAGCTGTGGATACAGAGCCACCATAGGAATCAGGAATCAAGGAGggtgggtgttgtgtgtgtgtgccaacagcataccaccctgcatgccactgctggcttgcctctgaagctaagcagggttggtccctggatggtcCCTGGATGGgggaccagatgctgctggaagtggtgttggagggccagtaggagacactcttgattggggacattgccctgtgtagggtgccgtatttcagatgggacattaaacaggtgtcttgactctgtggtcactaagGATCCCTTGGCACTTAtcttaagagtaggggtgttaaccctggtgtcctggctaaattcccaatctggcccttatACCATCAGggcacctaatcatccccagcttccaattggctcattcatccccccctcctctgtaactattccccaggtctttgctgtaaatgagaatgtgttcttagtcaacttacctggtaaaataagggttagaTAAACGGTATGTTTGTGTTGACGGACCTGTGTTTTTATTCACAGTGTCTTTACAGTGTCCGGGTCTGATGTGGGCATCTCCTCCAATCCCGATGTTGGTGTCAAAGTTTGCTGAGATTCCAACTTTAATGCAGTCCTGGAGCTTTCTCTCAGTCAGCTCTATAGGAGAGACAACATTGCTAAGAGATCACATACGGACATCACTGCAAACAGGAGAGGTTTTTATATGGTCACATTTCATTCATTTTCCCAAATCATTATAAAAAAACATGCATATAGAACCAAATATTTTCTCTCTTATCCTCAATACAATGTTGGGCTGTTTTGAATAAGAGCCCTAGCTAGTATTGATGTTTCATGTATCAGTGGTAGcctcttaaaggcccagtgcagtcaaaatgttgttttacatttttatcaGATGGCAAAAGTCCCGACGTTAAATCTTCGTCATACTTCTTCTGCACAAAACCCCTCTTACACCATTTAAGATAGAAACGCCTTTcaaactttaaaatgtgcagactGGTCTGGAATAGTGGGCTTGTATACAACTGTTTGATATTATTTACACTTTCTGTCCATCTTCATTTACTttaattgtgacatcatcacttcaaACTTCCATTCACTGTAAATGCAACAATGCAacatttgacacaaatcagctacttTGGCTAAACACTTATACATCTTCTCTGCTCTTCAAATCTGAAATAATAACATCATTATCTGGTACCATTACAGCATCAACAACATTTTCTGTAACTTTAAAAACTGACATTTTGATCTTtcccaacaagttagacaagaagttagagggTATGAAATCTTCATCCACTTCTCTGCTATTCCAATCagtccactgaacaaaaatatccgCCAAGGATCTAACAATACAGCCGTTTTAGTAactgcattaaaaaaaaatggcCAACTTTTTCCTAACAACTGACATTTTGACCAAAGTTGAAGTAGACATCTTGGTCTACTTCTGTGCGATACATATCTGGAAATACGAACAGAAATATCTACTACCAATCAAGCGCTACAGATGTGGTATGAAA
>TU1187359
TCAATAAAAGGTCAAACTTTATTGGCAATGTTGATTTGTAAAACAGAACTACTTCAAGGAATACGTTGATACAGTTTTTAATATTAAAAAAtgacatatgtgtgtgtgtctggcgcgTGCGTGTggatgtgtttgcgtgtgtgtatgagtgtgagtGCGTGAGCGAACATGTGTATAAGATGCATTAACTCCTCTTTGTCTACATGTATGGGGTTCCGTTAGTTATGCTGTGTcatcatagtgttctgtatgaGTGTGCTCAGCAGTAGTCTTCAGTGACTATGTCTCCCCTGCAGGTGGCATCAGAAAGGCCCTGTGTGTTACAGCTGCGGGTCCTTATACGTTTTCCTCCACTGCAGCCTGACCAGGCTGCCCAACACGACCAGTTCCCCTCCTGAGGAACACTCTCCACGGGGGTTTTAGTATTCTTATCTGGAGAAGAAAACTATATTTTCAGCTTGACAGCTTTAACTATATACATAGGACAGTGTGCTTGTGCGTGCATACATGCTTGGGCATGCGTGTGTATACAACGGCTGGCTCCACTCACTGTTATCAGCCTTGGCATCCTGGCAGGCCAGACCTTCAAACTggggcagacagagacacaggcacTTCCCATCCAGCAGGGCCAGAGAGCCCCCGTTGTGACAGGGCTTACACTTGCACACACTGTACTCAGCCTCGTACTCCTGAGTGGCTCTCTGCATGTTAAGCCTCCTGGTGTTCGCATCAGGCATACTCAGTGGGATCAGGGTCTGAATGGGTTCTGGCTatgaggggagacagacagacaggacaggaaacTGACTTACTGTAACATTCAGTTCAATACAACTCAAGGAAACAGAGTTGTGATGTGAACTGGAGACAGATGGAAGTGGAGTTATTGGGCATGGGATAGAATGACGATGtgctgaatctc

Function

NR:

description
complement component C9 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1187362 False 2499 lncRNA 0.45 3 15053224 15138711
TU1187359 True 925 lncRNA 0.47 2 15113505 15138711

Neighbor

gene id symbol gene type direction distance location
LOC110537021 LOC106568367 coding downstream 106249 14896348 ~ 14946975 (-)
c3ar1 c3ar1 coding downstream 177652 14869739 ~ 14875572 (-)
LOC110537020 LOC106568373 coding downstream 221679 14829621 ~ 14831545 (-)
tdgf1 LOC106568419 coding downstream 800276 14249910 ~ 14252948 (-)
zmp:0000001301 LOC106568410 coding downstream 839648 14198158 ~ 14213576 (-)
LOC110537028 LOC106568361 coding upstream 13298 15152009 ~ 15154387 (-)
LOC110536797 LOC107675342 coding upstream 198808 15337519 ~ 15339341 (-)
LOC110537035 LOC106568356 coding upstream 206209 15344920 ~ 15362787 (-)
LOC110537036 LOC106568354 coding upstream 225975 15364686 ~ 15381943 (-)
LOC110537037 LOC106568353 coding upstream 270280 15408991 ~ 15449896 (-)
G1041895 NA non-coding downstream 14576 14992760 ~ 15038648 (-)
G1041871 NA non-coding downstream 99238 14953749 ~ 14953986 (-)
G1041866 NA non-coding downstream 104532 14948484 ~ 14948692 (-)
G1041859 NA non-coding downstream 111678 14939792 ~ 14941546 (-)
G1041831 NA non-coding downstream 175688 14877244 ~ 14877536 (-)
G1041979 NA non-coding upstream 39854 15178565 ~ 15313769 (-)
G1042016 NA non-coding upstream 87010 15225721 ~ 15268296 (-)
G1042069 NA non-coding upstream 178161 15316872 ~ 15317081 (-)
G1042072 NA non-coding upstream 184060 15322771 ~ 15323060 (-)
G1042074 LOC100135965 non-coding upstream 185300 15324011 ~ 15328086 (-)
G1040432 LOC106568413 other downstream 742172 14307600 ~ 14311052 (-)
G1040300 NA other downstream 873083 14178658 ~ 14180141 (-)
G1039504 NA other downstream 1697429 13355300 ~ 13355795 (-)
LOC110536986 LOC106568381 other downstream 1730508 13321118 ~ 13324415 (-)
G1039366 NA other downstream 1900917 13151021 ~ 13152307 (-)
G1042500 NA other upstream 965452 16104163 ~ 16104883 (-)
LOC110537059 LOC106568318 other upstream 1186252 16324956 ~ 16328168 (-)
LOC110537061 LOC106568319 other upstream 1394906 16417638 ~ 16549073 (-)
LOC110537077 LOC106568284 other upstream 1926610 17065241 ~ 17068020 (-)
G1044482 NA other upstream 2557418 17696129 ~ 17697105 (-)

Expression


Co-expression Network