G1041934


Basic Information

Item Value
gene id G1041934
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15076403 ~ 15079294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1187369
CCCTCCACCACCAGAACCACGCCTGCCCCCTCCACCAGAAACACCACCATTAGTTTCACCAGAACGGTCACTAGGCCAGACAGTTCCCCCAGGGTGACCTGGGAACAGCCCTCTGATGTCCAGGCCTTCCACTCAGACCCAGATCCCAGTACTTCCCAATGTACTACAGCTACCAAGcctTCTCAGGTACCAGCCACCCAGGCCATTACGTCTCCCTGTGTAGACAGCTGTTCAGCAGGTGAGGAACCCCTCAACGTGTCCCAGTACTTCTTCAGTGACATCTTCACTGAGGTTGAGGGaagtgagggatgagagggggaggaaggaggaggaagtgaAAGGAGAAACGGAAGTCACTCTCGGTTTAAATCAAACCGGAAAACAAAATGTTAAGAAATCCTTGAAAGATTGCGCTTGAGAAAAATCAGGGTTCTTTGCAcgtatgtttgtgtatgtagcTGTAAAATTATGTCTCTGCTTGTGATTATGCTGTTTCATGCTTGCAGTGAATAGATTTGGCCACAAGATGGCAACAGGGAACACAAACAAAGTGAAAATGTATCTTCAAATCATAAATGTTTTGTCCAAACTGGCACCTAGAAGCTTTGCCAATGTCCCATATTGGATGATTACATTTTGGGCTCTTTCACCCCAATCATATCTTCTAGCCTTTTGGGTAATCTatatattctaaaatatatttatttggttatattttttaaaacctcACAAAGCTAGACATGTATGGTCATTTTTCTCCATCTGCATACAAGCAGAATACTTGAAATCAATGTTAACTCACTCTTCTACATTGGAGAGTTTGGCAGTTTACTCAGGGACTTTCACATTCAGATTTGTGTTTTTATTTGAAGCATTTTTTACGTTTAAATCAGAAACCATTGACTTAAAATTAGCATTGTATATATGTTTATTTGAATGTAGATCAGATATACTGGAAGGGGTGTATTCCCCGAGCATTTACAGTTTTTCTTTCTTGGTGTATGAACAAGACCCAGCTTGATTGACACCACAGTGATGTCAACACTTGTTTCTTTATTTCATGCTACCTGAAGATACAGGACATATATTTTCAAATGGCTCTGCAAAGAAACCTCTCATTTAATACATGTACAAGTGACAAACTCACAGAAACCGTGCACAGATCATGAGTCCAATTTCAAGGATTTATTATGTTCTGCAGCCACTGTTCAAACTAACGTAGCTATTATATAGCTCATGTGAATACAATTGTATACGTTAATGTCTCCTTTAGTGTTATGTCTTGCTACATTATAGAAAAGTGAGTATAGAAAAGTAGAAGAAATGCATAAGAATGGTCAGAGGGTCTTGAAACTGGACTAGTGTAGAACAGTCCTGCTGCACACTAAACACTGCTGGACTAGTGTAGAACAGTCCTGCTGCACACTAAACACTGCTGGACTAGTGTAGAACAGTCCTGCTGCACACTAAACACTGCTTCTTGCAGACCACCTATACAGAACCTTATGTTCACATAAGAAATATGTTACAAAGTTTTTGAATGGAACGGATATCATCTTAGTTAGTCTCAACAGAAATTAAGAGGACACATGATCTCAAAAGCCTTAAAAGTGTAATGAAAACTTCAGTATTTGAGTGTAGTCTTTTTTTGCTGTGTGGTGTGTCggggggatgggggaggaatGTGCAGATGTTTCATTTCCAAGCAGCATAGAGAGGCAGTGAGATCGAAGAGACCACGCTGCATGTTACTAGGTGACCTCACTACATAAATATTCCACGCTCTCACAGTCAGCCCTTATGCAGTTCCACTCTTCTTTTGGTCCATGTTGAATAGGGATGTAAAGGAATTCACTTTTATAGACCCTGTGCTTTTAAATTAATCAGGGGTTTTCCAGCTGTTTCTGTTCTGCCTTAAAGATGTGAAATAAACACTGTGCATGAGAGGTATTACTTGCCAGTCAATGTTTTAAGCCAGTATGAACTCATCACTAGTAATGTCTGTCTCTGATTATGAACATGCAATGGTAGATTGTCGTAAACGTTTTTGTGGATAACTCCAAACCACTAATTGTGGTGATAAACTGAATACTGTAATCTGTAATTAAGTGTAATCAGGAACCAATTAAGTAAAAATATAGGGAATAATTTAAGTGCATTATCTTCCAGGGAAGAAGTGGTAGAGCTTCTGTTGGTAGTGGACATTCAAGGGAATCCACATCCAGGGTCCAGTCTGGGTGAATTACACAGGTGTATTTGATTTGCACA

Function

NR:

description
PREDICTED: mucin-5AC-like isoform X4

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1187369 True 2268 lncRNA 0.40 2 15076403 15079294

Neighbor

gene id symbol gene type direction distance location
LOC110537023 NA coding downstream 930 15070072 ~ 15075473 (-)
LOC110537021 LOC106568367 coding downstream 129428 14896348 ~ 14946975 (-)
c3ar1 c3ar1 coding downstream 200831 14869739 ~ 14875572 (-)
LOC110537020 LOC106568373 coding downstream 244858 14829621 ~ 14831545 (-)
tdgf1 LOC106568419 coding downstream 823455 14249910 ~ 14252948 (-)
LOC110537026 LOC106568365 coding upstream 6623 15085917 ~ 15096696 (-)
LOC110537025 dab2 coding upstream 20250 15099544 ~ 15114328 (-)
LOC110537028 LOC106568361 coding upstream 72715 15152009 ~ 15154387 (-)
LOC110536797 LOC107675342 coding upstream 258225 15337519 ~ 15339341 (-)
LOC110537035 LOC106568356 coding upstream 265626 15344920 ~ 15362787 (-)
G1041895 NA non-coding downstream 37755 14992760 ~ 15038648 (-)
G1041871 NA non-coding downstream 122417 14953749 ~ 14953986 (-)
G1041866 NA non-coding downstream 127711 14948484 ~ 14948692 (-)
G1041859 NA non-coding downstream 134857 14939792 ~ 14941546 (-)
G1041979 NA non-coding upstream 99271 15178565 ~ 15313769 (-)
G1042016 NA non-coding upstream 146427 15225721 ~ 15268296 (-)
G1042069 NA non-coding upstream 237578 15316872 ~ 15317081 (-)
G1042072 NA non-coding upstream 243477 15322771 ~ 15323060 (-)
G1042074 LOC100135965 non-coding upstream 244717 15324011 ~ 15328086 (-)
G1040432 LOC106568413 other downstream 765351 14307600 ~ 14311052 (-)
G1040300 NA other downstream 896262 14178658 ~ 14180141 (-)
G1039504 NA other downstream 1720608 13355300 ~ 13355795 (-)
LOC110536986 LOC106568381 other downstream 1753687 13321118 ~ 13324415 (-)
G1039366 NA other downstream 1924096 13151021 ~ 13152307 (-)
G1042500 NA other upstream 1024869 16104163 ~ 16104883 (-)
LOC110537059 LOC106568318 other upstream 1245669 16324956 ~ 16328168 (-)
LOC110537061 LOC106568319 other upstream 1454323 16417638 ~ 16549073 (-)
LOC110537077 LOC106568284 other upstream 1986027 17065241 ~ 17068020 (-)
G1044482 NA other upstream 2616835 17696129 ~ 17697105 (-)

Expression


Co-expression Network