G1042074 (LOC100135965)


Basic Information

Item Value
gene id G1042074
gene name LOC100135965
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15324011 ~ 15328086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1187528
caattttagaaaCAGGTTTATTTTGCTCATATGTACAACATTTTTACAGAACAGGTGTAAAAGCAGTAAACTAGGAATGTACACAGAGGTCACACCTGTAACATTTACTTGACTCAACTATATATCAAATCAAGTATAAAAACAAACTAGGTAGAATTTCATAGATTCCCTAAAACGGTCTTTAAAACCCATGCAGCAGGATTCACTAGTGCCTTTCACAGACTTAATAAGGCAGCACTGTAGTCATCATTGCCCTTTATGAACATTtttcaaacataaaaaaaaaaaaaaaagtctagaACACATCCAGGTTCTAAAACACTAGACCAGTGGGTAGCTGGATGCCGTGGCGATACCACAGTGGTTCTTCCTGTCTTTGGCCATGTAGATATAGCCTTTGTCTCCCCATTTCTCACTCCAGCTGTTCTTGACAATCCAGTATTTCTTGCCATCCACATCTTCTCCTTCAAAACCATATCCCACCACTAGAACACCATGGTCCAACTCCTCACTGCTGCACTCCTTCTCATAGTAGATCCCAGACTCATAGAACTGAAAGGACTCGTGGCCGGCATCGATGGCAACAGAGACAGGACCGACTGCAGCCACAGCCTTCATCATAGCATGCTCCTTGCCACTGGGGATGTCCACAAAGCCAGTCTCGTTGGCAGCACTGAACTCTGGCTTGTAGTGGCAAGGGTCCTCATCCTGGGCGAATAAGAGGatAGTGCCGACGTAGGGGTAGGACTCCTCTGTGTCCAGGCCGGCGTTGTCTTGGATGTACTGGAAGGCCTGGTCCATGAGCCCACCGTTACAGCCCTCGTTGCCCTCCGGTCTGGAGCAGTCCACCAGGTTCTGTTCACTCAGAGACACCAGCTTGCCAGTCTTCCTGAACTGCTGGCCCTCCATGGCCCCGGTGGTGCTGAACGCCCAGCAAGACCCACATGATCCCTGGTCCTTGACGGGAGTGACGTAGCCCTTCTCCCTCCAGTCAACAGCTTTAGGTGCCTGCAGGTAGTTGGGTTCCATGAACAGAGAGCCCTTGAACTTCCTCTCAGTCGTCTGCTTGTAGCCGTTCATCGTCTGCCTGAACTCTTCATTGGTCATGTCACCAAAGTGGTTCATGCCCAGACGGTAGGAGTGTTTTCCCATGGTGTGTTCGAGGTTGTGAATCTCAATCTTCTTCAGGTTTTTCTCCCAAACCATCCTCCTCCAGCCCTCCTCACTCTCATGGTAGTGCTTGCTGTGCCAGTTTTTCCACAGGTGCCAATGGTCCTCCAACTGAGAGTCAAACCTAGGAGCCGCACACACAGCACTCACACAGAGCACCAACACTGCCAAGTACAGTGCTGTCATGGCCAAACAGTTAATGTATTGTCAATTTGCAGTAGAAGTGTGAAGGTCCCTGCTGTTGCGTGTCGATCAATACATAAATAGTGTAGACACACCACTTTATacagacagtttttttttgtaCAGTAGGAG
>TU1187526
CATTGCCTTTTTGCTACTAACCAGACTCATAGAACTGAAAGGACTCGTGGCCGGCATCGATGGCAACAGAGACAGGACCGACTGCAGCCACAGCCTTCATCATAGCATGCTCCTTGCCACTGGGGATGTCCACAAAGCCAGTCTCGTTGGCAGCACTGAACTCTGGCTTGTAGTGGCAAGGGTCCTCATCCTGGGCGAATAAGAGGatAGTGCCGACGTAGGGGTAGGACTCCTCTGTGTCCAGGCCGGCGTTGTCTTGGATGTACTGGAAGGCCTGGTCCATGAGCCCACCGTTACAGCCCTCGTTGCCCTCCGGTCTGGAGCAGTCCACCAGGTTCTGTTCACTCAGAGACACCAGCTTGCCAGTCTTCCTGAACTGCTGGCCCTCCATGGCCCCGGTGGTGCTGAACGCCCAGCAAGACCCACATGATCCCTGAGGGAGGC

Function

NR:

description
procathepsin L precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1187528 False 1485 lncRNA 0.48 8 15324011 15328086
TU1187526 True 444 lncRNA 0.58 2 15326335 15327083

Neighbor

gene id symbol gene type direction distance location
LOC110537028 LOC106568361 coding downstream 169624 15152009 ~ 15154387 (-)
LOC110537025 dab2 coding downstream 209683 15099544 ~ 15114328 (-)
LOC110537026 LOC106568365 coding downstream 227315 15085917 ~ 15096696 (-)
LOC110537023 NA coding downstream 248538 15070072 ~ 15075473 (-)
LOC110537021 LOC106568367 coding downstream 377036 14896348 ~ 14946975 (-)
LOC110536797 LOC107675342 coding upstream 9433 15337519 ~ 15339341 (-)
LOC110537035 LOC106568356 coding upstream 16834 15344920 ~ 15362787 (-)
LOC110537036 LOC106568354 coding upstream 36600 15364686 ~ 15381943 (-)
LOC110537037 LOC106568353 coding upstream 80905 15408991 ~ 15449896 (-)
prune2 LOC106568351 coding upstream 250989 15579075 ~ 15596603 (-)
G1042072 NA non-coding downstream 951 15322771 ~ 15323060 (-)
G1042069 NA non-coding downstream 6930 15316872 ~ 15317081 (-)
G1041979 NA non-coding downstream 10242 15178565 ~ 15313769 (-)
G1042016 NA non-coding downstream 55715 15225721 ~ 15268296 (-)
G1041934 NA non-coding downstream 244717 15076403 ~ 15079294 (-)
G1042075 NA non-coding upstream 1645 15329731 ~ 15329970 (-)
G1042097 NA non-coding upstream 65808 15393894 ~ 15394565 (-)
G1042101 NA non-coding upstream 66681 15394767 ~ 15394966 (-)
G1042102 NA non-coding upstream 68004 15396090 ~ 15396297 (-)
G1042104 NA non-coding upstream 70173 15398259 ~ 15398522 (-)
G1040432 LOC106568413 other downstream 1012959 14307600 ~ 14311052 (-)
G1040300 NA other downstream 1143870 14178658 ~ 14180141 (-)
G1039504 NA other downstream 1968216 13355300 ~ 13355795 (-)
LOC110536986 LOC106568381 other downstream 2001295 13321118 ~ 13324415 (-)
G1039366 NA other downstream 2171704 13151021 ~ 13152307 (-)
G1042500 NA other upstream 776077 16104163 ~ 16104883 (-)
LOC110537059 LOC106568318 other upstream 996877 16324956 ~ 16328168 (-)
LOC110537061 LOC106568319 other upstream 1205531 16417638 ~ 16549073 (-)
LOC110537077 LOC106568284 other upstream 1737235 17065241 ~ 17068020 (-)
G1044482 NA other upstream 2368043 17696129 ~ 17697105 (-)

Expression


Co-expression Network