G1042386


Basic Information

Item Value
gene id G1042386
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15975853 ~ 16004742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1187865
ATAATATGTGATAGCCTGTCCACGAGAAAATGTACAGGCCTATCATCCGTTACATCTTTCTGAATGCTCAAATCCTAAGAATAGCAGGAGTACAACAAAATGACTAACAATGCTCTAAAAACTATGCTCTGTTCTTTTTTCATTATTCAAAATTGAGCGGTGCCATTATTTGTCTTTATTCAGCTTCATTCAACTACTTTCCTAAATAATTTTACAATTTCCACATGCTTGAGAAACAAATAAATTGACTTGACTTAGTGTTAGCTATGTAATAGATAACAGCATGCCACTAAAACAGAACAGCTATTATGACCTTCAActagatctactgtctctattatattatgacagaccagctagatctactgtctttattatattacaacagaccagctgtatctactgtctccatttcactttggccattgatgcggtcctgccctctcctcaacagcctcaaataggctatttcatgtgggttggggtggggcggcagacacacgcatctcacatttcatgaaaatgtttatatattgcttctaaattttaaaaaaatcacaaatgatattttatattattaatttcaaacaagggcactagcatgataagaacttaccagtccaaaacgagtcctctcccgttcaaaaaatattcctccacaatcgctaaatgaagcgtcctacaacaatctctgtctcaccatcccaatcaatttattctaaaattgtgtgtacatctgtatatctagacttagatttagctttccctgacttagtcaccataatgattgatatacaaacagctgaatctgcgcatTCACCAAACAATGTGTGCGTTATATGta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1187865 True 844 lncRNA 0.36 2 15975853 16004742

Neighbor

gene id symbol gene type direction distance location
LOC110537052 LOC106568339 coding downstream 55598 15879419 ~ 15920255 (-)
LOC110536799 LOC106568341 coding downstream 118829 15806675 ~ 15857024 (-)
LOC110537049 LOC106568342 coding downstream 182022 15782631 ~ 15793831 (-)
LOC110539118 NA coding downstream 204102 15760264 ~ 15771751 (-)
LOC110537048 LOC106568343 coding downstream 217984 15722857 ~ 15757869 (-)
mzt2b LOC106568316 coding upstream 302615 16307357 ~ 16312346 (-)
ppwd1 ppwd1 coding upstream 315686 16320428 ~ 16324762 (-)
LOC110537059 LOC106568318 coding upstream 320214 16324956 ~ 16328168 (-)
LOC110537061 LOC106568319 coding upstream 412896 16417638 ~ 16549073 (-)
LOC110537062 csn4 coding upstream 564744 16569486 ~ 16576847 (-)
G1042167 NA non-coding downstream 110206 15844721 ~ 15865647 (-)
G1042179 NA non-coding downstream 431856 15511196 ~ 15543997 (-)
G1042175 NA non-coding downstream 470984 15504369 ~ 15504869 (-)
G1042150 NA non-coding downstream 477901 15497500 ~ 15497952 (-)
G1042121 NA non-coding downstream 532691 15442857 ~ 15443162 (-)
G1042425 NA non-coding upstream 7485 16012227 ~ 16012762 (-)
G1042426 NA non-coding upstream 8665 16013407 ~ 16013704 (-)
G1042428 NA non-coding upstream 12775 16017517 ~ 16017749 (-)
G1042429 NA non-coding upstream 13184 16017926 ~ 16018160 (-)
G1042430 NA non-coding upstream 13658 16018400 ~ 16018666 (-)
G1040432 LOC106568413 other downstream 1664801 14307600 ~ 14311052 (-)
G1040300 NA other downstream 1795712 14178658 ~ 14180141 (-)
G1039504 NA other downstream 2620058 13355300 ~ 13355795 (-)
LOC110536986 LOC106568381 other downstream 2653137 13321118 ~ 13324415 (-)
G1039366 NA other downstream 2823546 13151021 ~ 13152307 (-)
G1042500 NA other upstream 99421 16104163 ~ 16104883 (-)
LOC110537077 LOC106568284 other upstream 1060579 17065241 ~ 17068020 (-)
G1044482 NA other upstream 1691387 17696129 ~ 17697105 (-)

Expression


Co-expression Network