G1042533


Basic Information

Item Value
gene id G1042533
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16107842 ~ 16175959 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1188038
ggatagagacaaggagaggagacagagaggatagagcagggatacagaggaaacatagagaatagagacaaggagaggagaaagagaggatagagacaaggagatgagacagagaggatagagcagggatacagggGAAACAGagtggatagagacaaggagaggagacagataggatacagggaggatacagaagagaaagagaggaaagagacaaggagaggagaaagagaggatagagacaaggataggagaaagagaggatatagacatggagaggagacagagaggatagagacaaggagaggagaaagagaggatagagaaaaggagaggagacagagaggatagagcagggataccgaggaaacagagaggatagagacaaggagaggagaggacagagcagggatacagaggagacagagaggatagagacaaggagaggagacatagaggatagagacaaggagaggaggcagagaggatagagacaaggagaggaggcagagaggatagagacaatgagaggaggcagagatgatagagcaggggtacagaggatacagagaggatagagacaaggagatgagaaagagaggatagagacaaggagaggaggcagagatgatagagcagggatacagaggaaacagagaggatacagacaaggtgaggagagagagaggatagagcagggatacagaggaaacagagaggatagagacaaggagaggagaaagagaggatagagacaaggagaggagacagagaggatagagacaaggagaggagacagagaggatagagac
>TU1188039
ACAGagtggatagagacaaggagaggagacagataggatatagggaggatacagaggagaaagagaggatagagacaaggataggagaaagagaggatatagacatggagaggagacagagaggatagagacaaggagaggagaaagagaggatagagaaaaggagaggagacagagaggatagagcagggataccgaggaaacagagagatagagacaaggagaggagaaagagaggatagagcagggatacagaggaaacagagaggatagagacaaggagaggagaaagagaggatagagacaaggagaggagacagagaggatagagacaaggagaggagacagagaggatagagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1188038 False 812 lncRNA 0.48 3 16107842 16175576
TU1188039 True 361 lncRNA 0.47 3 16107842 16175959

Neighbor

gene id symbol gene type direction distance location
LOC110537052 LOC106568339 coding downstream 187587 15879419 ~ 15920255 (-)
LOC110536799 LOC106568341 coding downstream 250818 15806675 ~ 15857024 (-)
LOC110537049 LOC106568342 coding downstream 314011 15782631 ~ 15793831 (-)
LOC110539118 NA coding downstream 336091 15760264 ~ 15771751 (-)
LOC110537048 LOC106568343 coding downstream 349973 15722857 ~ 15757869 (-)
mzt2b LOC106568316 coding upstream 131398 16307357 ~ 16312346 (-)
ppwd1 ppwd1 coding upstream 144469 16320428 ~ 16324762 (-)
LOC110537059 LOC106568318 coding upstream 148997 16324956 ~ 16328168 (-)
LOC110537061 LOC106568319 coding upstream 241679 16417638 ~ 16549073 (-)
LOC110537062 csn4 coding upstream 393527 16569486 ~ 16576847 (-)
G1042496 NA non-coding downstream 5589 16102043 ~ 16102253 (-)
G1042461 NA non-coding downstream 49302 16058296 ~ 16058540 (-)
G1042436 NA non-coding downstream 73645 16033735 ~ 16034197 (-)
G1042433 NA non-coding downstream 78177 16029309 ~ 16029665 (-)
G1042430 NA non-coding downstream 89176 16018400 ~ 16018666 (-)
G1042558 NA non-coding upstream 30543 16206502 ~ 16209108 (-)
G1042657 NA non-coding upstream 130162 16306121 ~ 16306330 (-)
G1042646 NA non-coding upstream 142306 16318265 ~ 16320083 (-)
G1042665 NA non-coding upstream 158270 16334229 ~ 16334543 (-)
G1042670 NA non-coding upstream 160716 16336675 ~ 16337001 (-)
G1042500 NA other downstream 2959 16104163 ~ 16104883 (-)
G1040432 LOC106568413 other downstream 1796790 14307600 ~ 14311052 (-)
G1040300 NA other downstream 1927701 14178658 ~ 14180141 (-)
G1039504 NA other downstream 2752047 13355300 ~ 13355795 (-)
LOC110536986 LOC106568381 other downstream 2785126 13321118 ~ 13324415 (-)
LOC110537077 LOC106568284 other upstream 889362 17065241 ~ 17068020 (-)
G1044482 NA other upstream 1520170 17696129 ~ 17697105 (-)
G1044649 LOC106568140 other upstream 1842145 18018104 ~ 18018758 (-)

Expression


Co-expression Network