G1042646


Basic Information

Item Value
gene id G1042646
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16318265 ~ 16320083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1188184
ATTTACAAAAGCCATGATAAAATCCACGAGTAACGTGTGGATGTGCACTGTGCTTCTAAATGTTTTAAAAACTCCTGTCAGAATCTGAGATGCTTTAACAGAGGGCTCTTCACACATGCATTTTATTTCTACATAGAATTTGTAACATTACATAGCAATGAGGAAAGTGAATTCAAACCAAAGGATGGTTCCTCCATACAATAACAGGAGTTGAAAGGTGTTTGGTTAATGTTTCACATCTACATGTGGGTAACATTAATGTAGAATGTAACAATCAGCACTCCAGACAGATGGGCTAAAACAGAAGACCATCACAGGTTGTGATGAAAAAAATTCAAACCAGGGGTCCTGGTTTCAAAAGAAGCCAGTATCACACTCTGTAGGGCACAACATTCTGGAACGTTCAGAAATATAGTGTGTAGATCATCCTCTGTCAATTAGATGAAGGAATCATGTCTAGTCAATCGTTGCACCCTCATGAGCACAACCCAGATGTATTGAAGCGGCAGAAAAGTGCATCCAATGAATTCTGCATGCAAGACACTCCACAAAACAGGTGGGAGAAAGATTTCATATAACACTTTAGATATTTCCCACCACAGCTACTACAATATCccctacccacccacccaacaTAAATAGCTTTTTCACTCAACTGCACTATTTAACCAATGTCAATAATAGCTGAACTCAGCCCACTACCGGTGTCATTTCAAGACCTGATGCTGCATTACATGAAATCATCACAAGTCAAGTGCATTGGTACCAATGAAGAAAATCTACAACATGGAGTTTCGCCATGAACTGAATCTCATCTGATCTGCATTGAGGCAATATGTAGTCTTATAAGCAGTTAGTTTAGTAAGCTTGAGGGAATCCCTATAACCTGGCCCTGTTAGCATACCCAGGATAGAGCAGAGTACAAAGCATTACGACTAATGATGGCTTCACTGGCTGTGGGTAAGAAGCTTATCTGCAGGTTAGGGGTGAGAAGGGTAGAACGGCTATGGGATGTAGGGCTAAGGCCTTAGACTAGGGCCTTGGTATGGGGTGAAAGACTAGGGCCTTAGTATGGGGTGAAATGTAGGGCTAGGGCCTTAGTATGGGGTGAAAGGTAGGGCTAGGGCCTTAGTATGGGGTGAAAGGTAGGGCCTTAGTATGGGGTGAAAGGTATGGCTAGGGCCTTAGTATGGGGTGAAAGGTAGGGCTAGGGCCTTAGTATGGGGTGAAAGGTAGGGCTAGTGCCTTAGTATGGGGTGAAATGTAGGGCTAGGGCCTTAGTATGGGGTGAAAGGTATGGGATGAGACTTTGGTAGGACTGGTCTTTAGGGTATGGGTTAGACTGGGTCTACCATAAGCCAATCATCAGGTAAAAGGTTTAGGTAGATGTGACTGGTGCAGGTCTATGGTGGACAGGTCTTTATGGTGTGGATGGTTTAAGAAGATTGTTCTGGGATCTATGGTAAGGGGTTTTTACTTGGTAACAGAAGTCAGTCATCAGGGGAGGTCTAGGCCACGTCCAGTACACCTGCAGCAAGGGGAGGTCTAGGTCACGTCCAGTACACCTGCAGCAAGGGGAGGTCTAGGCCACGTCCAGTACACCTGCAGCCACCAGCTGTCGGGACAGCCAGTCCAGGCCCTCGTGGAGCCCCATGCCACTGCGGGCGTCACATCCCTGGATGTGCCAGCTCCTCCCACAGCACAGCTTATGGAGACTCAGCAGCTCCGTCATCTCCTCCACCGACACAGCCCCAGGG

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM23-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1188184 True 1757 lncRNA 0.46 3 16318265 16320083

Neighbor

gene id symbol gene type direction distance location
mzt2b LOC106568316 coding downstream 5919 16307357 ~ 16312346 (-)
LOC110537052 LOC106568339 coding downstream 398010 15879419 ~ 15920255 (-)
LOC110536799 LOC106568341 coding downstream 461241 15806675 ~ 15857024 (-)
LOC110537049 LOC106568342 coding downstream 524434 15782631 ~ 15793831 (-)
LOC110539118 NA coding downstream 546514 15760264 ~ 15771751 (-)
ppwd1 ppwd1 coding upstream 345 16320428 ~ 16324762 (-)
LOC110537059 LOC106568318 coding upstream 4873 16324956 ~ 16328168 (-)
LOC110537061 LOC106568319 coding upstream 97555 16417638 ~ 16549073 (-)
LOC110537062 csn4 coding upstream 249403 16569486 ~ 16576847 (-)
LOC110537069 LOC106568328 coding upstream 296284 16616367 ~ 16630120 (-)
G1042657 NA non-coding downstream 11935 16306121 ~ 16306330 (-)
G1042558 NA non-coding downstream 109157 16206502 ~ 16209108 (-)
G1042533 NA non-coding downstream 142306 16107842 ~ 16175959 (-)
G1042665 NA non-coding upstream 14146 16334229 ~ 16334543 (-)
G1042670 NA non-coding upstream 16592 16336675 ~ 16337001 (-)
G1042704 NA non-coding upstream 43246 16363329 ~ 16363597 (-)
G1042722 NA non-coding upstream 59078 16379161 ~ 16379363 (-)
G1042745 NA non-coding upstream 83378 16403461 ~ 16403692 (-)
G1042500 NA other downstream 213382 16104163 ~ 16104883 (-)
G1040432 LOC106568413 other downstream 2007213 14307600 ~ 14311052 (-)
G1040300 NA other downstream 2138124 14178658 ~ 14180141 (-)
G1039504 NA other downstream 2962470 13355300 ~ 13355795 (-)
LOC110536986 LOC106568381 other downstream 2995549 13321118 ~ 13324415 (-)
LOC110537077 LOC106568284 other upstream 745238 17065241 ~ 17068020 (-)
G1044482 NA other upstream 1376046 17696129 ~ 17697105 (-)
G1044649 LOC106568140 other upstream 1698021 18018104 ~ 18018758 (-)

Expression


Co-expression Network