G1043143


Basic Information

Item Value
gene id G1043143
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16792214 ~ 16805207 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1188747
AGATTTCACAGACAGTACAGAAAGAGCGAATCTGGCTGCTTTTAAGTGAGAGGGGACGCACAGACAAGCATAGTACACTATAGTTACTTCCGAGAGGGgacaatgacccaacacacacccaggctgtgtaagggctatttgaccaagaacgagagtgatggagtgctgcatcagatgacctggcttccacaatcacccgacctcaaaccaaatgagatggtttggtatgacttggaccgcagactgaagaaaaagcagcca
>TU1188749
AGATTTCACAGACAGTACAGAAAGAGCGAATCTGGCTGCTTTTAAGTGAGAGGGGACGCACAGACAAGCATAGTACACTATAGTTACTTCCGAGAGGGGGGTAAATTATGTAGTTTGGGAATTTCAGCCGCACGGAGCTGAGAAATACCCAGGCAGAACTCCAGGACTTAGAACAGCAGGAAAACTACACAGGATTTACACACGGGACATGAGAAATACCCAGGCAGATCTCCAGGACTTAGAACAGCAGGAAAACTACACAGGATTTACACACGGGACATGAGAAATACCCAGGCAGAACTCCAGGACTTAGAACAGCAGGAAAACTACACAGGATTTACACACGGGACATGAGAAATACCCAGGCAGAACTCCAGGACTTAGAACAGGAAAACTACACAGGATTTACACACGGGACATGAGAAATGGCACCAGAGGAAACATTTCACCTCTACCACAGATACCTCTCTTCCCACCCTTCACCATACCTCTTTAGTTTTCAACCTCCCTCTCCAACTACCACTACTGCAGAAccactacaatactacaatacatCTGTACATCATACTAAGAAAAGTCTAAATAGGCCTACATCCCCACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1188747 False 261 lncRNA 0.48 2 16792214 16805207
TU1188749 True 602 lncRNA 0.45 2 16796886 16805207

Neighbor

gene id symbol gene type direction distance location
LOC100305243 LOC106562364 coding downstream 153263 16634735 ~ 16638951 (-)
LOC110537069 LOC106568328 coding downstream 162094 16616367 ~ 16630120 (-)
LOC110537062 csn4 coding downstream 215367 16569486 ~ 16576847 (-)
LOC110537061 LOC106568319 coding downstream 243141 16417638 ~ 16549073 (-)
LOC110537059 LOC106568318 coding downstream 464046 16324956 ~ 16328168 (-)
LOC110537074 LOC106562412 coding upstream 135220 16940427 ~ 17041905 (-)
LOC110537073 LOC106568283 coding upstream 237164 17042371 ~ 17064591 (-)
LOC110537077 LOC106568284 coding upstream 260034 17065241 ~ 17068020 (-)
LOC110537076 LOC106568285 coding upstream 262974 17068181 ~ 17098190 (-)
LOC110537079 rilpl1 coding upstream 306556 17111763 ~ 17129179 (-)
G1043099 NA non-coding downstream 14636 16777303 ~ 16777578 (-)
G1043091 NA non-coding downstream 21411 16770601 ~ 16770803 (-)
G1043067 NA non-coding downstream 60558 16726131 ~ 16731656 (-)
G1043068 NA non-coding downstream 66447 16725494 ~ 16725767 (-)
G1043065 NA non-coding downstream 67460 16720868 ~ 16724754 (-)
G1043166 LOC106568302 non-coding upstream 53635 16858842 ~ 16862592 (-)
G1043218 NA non-coding upstream 77527 16882734 ~ 16883407 (-)
G1043482 LOC106562392 non-coding upstream 110119 16915326 ~ 16915671 (-)
G1043488 NA non-coding upstream 118296 16923503 ~ 16925143 (-)
G1043515 NA non-coding upstream 195840 17001047 ~ 17002690 (-)
G1042500 NA other downstream 687331 16104163 ~ 16104883 (-)
G1040432 LOC106568413 other downstream 2481162 14307600 ~ 14311052 (-)
G1040300 NA other downstream 2612073 14178658 ~ 14180141 (-)
G1044482 NA other upstream 890922 17696129 ~ 17697105 (-)
G1044649 LOC106568140 other upstream 1212897 18018104 ~ 18018758 (-)
G1044671 NA other upstream 1250904 18056111 ~ 18058392 (-)
G1044692 NA other upstream 1292356 18097563 ~ 18099722 (-)

Expression


Co-expression Network