G1043166 (LOC106568302)


Basic Information

Item Value
gene id G1043166
gene name LOC106568302
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16858842 ~ 16862592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1188776
AAATAAATTGATATTGGTGTATCAAATCTGAATTTTAACACATGAGCAATGTTGACACGGTTGAAGAAGTACAATCGTTTACCTATCATAATAAATAAAATGGAACATGAATGATATTTGTCTTTGGACAAAGGACCTATGGACAAACCTCTAGGGGAGGAGGGGACAAGAGACACTAGACAATGTTTCTGCACCCAAAAACAAACAGAGAAGGGCTTTTAaagcacagaacacagaaccaTTCAGCTAAAAATGAAAGACACTAAAAGTTGTAACCAAAGTTGGTTGGCTTTTTCATTTCAATGAACAAAGTTTGGTAGTCAGAACTCCCGTTTGGTTGTTTTAAAGCGTTAAGACAAGGCAAGAAAGAAGGCTGTTCTCATTGAATAATTCTAGAGAGATAACTAAAAAGTTAAAAAAGGAGAAACATAAAAAAGCGTAACAAAACAAAATTGAACAGTCAAGACCAACATAGCAACTTTCTGTCCTGCACAAAGTCAAGGAGTCGACAGAAGAGGCGTGTTGTGGGTTCGTTGTAGAGGCAAGTACATGTTTTAATTGGTTGTTCTGCATATAATGTAGATTATTTTTTTGTGACTTGAACACTGTGGAAGGAGACATGATGCGTGAACAAACCAAATTTCACCACAGCGTATTACTATGCTAATTATTAGTAAAGAGTCAGGGATTTTTTTCACGGCTTCGTAGGCACTGGGCCGGAGTTCTCCATTTGTAATGCTAAGGCATTACTGATCGGGCTCCTGggcagtttctctctctttctctcctcttatACCACGGTGCCCAATACAACTGTGTTCAACTGGAGGATTAATATATTTTGCTGGTCCATACTAAATACAACATCCATGTCCTTTTTTGCAAACAGCCGGTTCCTGTCAAGCAGTCCAGTggatgtcagtctgtctgtctctctggggtcgcCCAGCTAACAGTCCCACTGAGATGACCCCTAACCTTTGACCTTTGTCCTGGCCCCTGATGACGCAACGCGACACGTTTTAAAAGTCCTTCTGATATGTTTTGGTTATAAAAACCATGGTACTGCAGCTTCAAGTATTTTGCATTACATAGAATATGATTTAATAAATTAGTTAACGTATACATTTGTTTTCAATATTCAGACATATactattatatatacagtacaataaaatgctctcattctctcttttttATTTTCCTTTGCTTTTTTTGTTGAGAAATCCCTGAGAATGTATGTTGACAGTTGCTAAGTTTCCACAAGCGCAAGCACTATGACAGTATAATTGTGTTTTTCTGCAAGTGTGTGTTTACAGGTTGTTTCTGCAACTGCATGAGTTTCTGAGTGTGTCTGTTACTATGTGTttctatgcgtgtgtgtgtgtgtgtgtgtgtttctgcacgTGTCTAAAGCATCAGGGTAAACAACACTGCAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGGCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGCCAGCCTGGAGTTGGTGATCCCTGTTACTAAAGCCACAGCAGACCGTCAGCCTGGAGTTGGTGATCTCTCTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTGGAGTTGGTGATCCCTGTTACTAAAGCCACAGACAGCCTtgagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGCCACATCCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGTCACAGCAGACAGGCAGCCTGGAGTTGGTGATCCCTATTACTAAAGCCACAGCAGACAGTCAGCCTGGAGTTAGTGATCTCTCTCAGCCTGGAGTTGGTGATCCCTGTTACTAAAGCCACAGCAGTCAGCCTGGAGTTGGTAATCTCTGTTACTAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACCGTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTggagttgatgatccctgttacTAAAGCCACAGCAGACAGTCAGCCTGTTGTTGGTGatctctcttactaaagagacaTAAAACAAGAAATTGTGGACTGAACTGGATAGTGAACTGTTTGTGTTGTTATTTAACTGttaacacacactgaccacactGAGTGGGGGAAGGAGGGGTGAGGAAGGGCTAAGGATAAGGGGGGAATAAAGCTGGGTCCGTACGAGGTACTGGTCATGTCTGATGGAGTTGCTCTGTTTGGTTTTAAGCCTTGTTTGTCTCATTGTCTCTGAGCTGTGAGCATTTAACAGAGGGGGACAGGAGTGCTATGTGGACATCTCGCCACTGGACAACATATACTCAGTGTAAAAagattttatttttctctttagttctctctctctctcttacactcttTCACACTGTCTTTATACataaagggacacacacacacacacttccacaacATGACAATTTTCTTTTTTGTTTGCTTGTGAACTAAATAGGGTCTATACACATTAATACCGATGTGGCCTTTTGTTGTTTTCAGGTTTTTCTTTCACTTATTCCGTCACTTTTTAAGTTAAAAGGGATACAAACGCAGAATCAAGTAAAAGGGGGCGTGATCGCTCTCAATCTCCATACATCCATCAACCAATCACAATAGTTTTTAAGTTTAGTCTTCGTCAACCGAACCTCTCCCGTACGAGCATCATGAGTTTCTTCTTGCCCTTGTAGATCTGTTTGAGGTTGTCTATGAACTGGGTAAACTGGATGTGTCCGTCCTGGGCCATGAGGAACGTCTCTCTGGCCTTACTGAGGAACTCGATGAACTCGCTGTAGTGGCGCGGGCTGATGTGCGTGAGGCGAGAGTGCGTGGTGTTGATGTAGGCTCCGATGGTGGCGTCCAGCAGTTGCCTGAGTGGAGCCTTGTCCAGCGACATCAGCTTCCCAGAGTTCCTGCGGCTGTGCAGTGCCACCATGCCCGGCGTGGTCAATGTGCACCGTCTCAAAatgtctgacagcacagtggcgCACTTCACACTTTTCACCACCAGGGGAATGACGGCAGCCAGCTCATTCTTCCCCAGAGAGTGACTCAGAGCACAGGCCCACAGCACGTCATTGATAGCCGGGTGGGTGTCCTGGTTGTAGCTGAGGTTAAGGTGGGCCATGGCTAGCGTGGCCAGCTTGTAAGCCCTCATGGGATATCCTCTGTGCTCCATGTACCTGGCTATTGTAAAGAGCTGTGTGTAGCTCATCCCCGTGACGGCCGCGTCCAGAACGATCTGGTAGGCCGTCTCGAAGGCGATGTGGTCCTTCTCACAGAGGGTGAGGGCAGAGAGGGAACAGTTCTGGGGGTCCTTCATGGCACACTGCAGGGCCAGTGTTCGGGCGGAGGAGGCCAGGTTCTCCTGCTGGTGACAGTCCAGGTGCAGCCGGACGATGGTGGTGTTGGACATGACGGTGGTGGCCACGATGCTGGTGGCCTCGGTCGGGGTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1188776 True 3727 lncRNA 0.46 2 16858842 16862592

Neighbor

gene id symbol gene type direction distance location
LOC100305243 LOC106562364 coding downstream 219891 16634735 ~ 16638951 (-)
LOC110537069 LOC106568328 coding downstream 228722 16616367 ~ 16630120 (-)
LOC110537062 csn4 coding downstream 281995 16569486 ~ 16576847 (-)
LOC110537061 LOC106568319 coding downstream 309769 16417638 ~ 16549073 (-)
LOC110537059 LOC106568318 coding downstream 530674 16324956 ~ 16328168 (-)
LOC110537074 LOC106562412 coding upstream 77835 16940427 ~ 17041905 (-)
LOC110537073 LOC106568283 coding upstream 179779 17042371 ~ 17064591 (-)
LOC110537077 LOC106568284 coding upstream 202649 17065241 ~ 17068020 (-)
LOC110537076 LOC106568285 coding upstream 205589 17068181 ~ 17098190 (-)
LOC110537079 rilpl1 coding upstream 249171 17111763 ~ 17129179 (-)
G1043143 NA non-coding downstream 53635 16792214 ~ 16805207 (-)
G1043099 NA non-coding downstream 81264 16777303 ~ 16777578 (-)
G1043091 NA non-coding downstream 88039 16770601 ~ 16770803 (-)
G1043067 NA non-coding downstream 127186 16726131 ~ 16731656 (-)
G1043068 NA non-coding downstream 133075 16725494 ~ 16725767 (-)
G1043218 NA non-coding upstream 20142 16882734 ~ 16883407 (-)
G1043482 LOC106562392 non-coding upstream 52734 16915326 ~ 16915671 (-)
G1043488 NA non-coding upstream 60911 16923503 ~ 16925143 (-)
G1043515 NA non-coding upstream 138455 17001047 ~ 17002690 (-)
G1042500 NA other downstream 753959 16104163 ~ 16104883 (-)
G1040432 LOC106568413 other downstream 2547790 14307600 ~ 14311052 (-)
G1040300 NA other downstream 2678701 14178658 ~ 14180141 (-)
G1044482 NA other upstream 833537 17696129 ~ 17697105 (-)
G1044649 LOC106568140 other upstream 1155512 18018104 ~ 18018758 (-)
G1044671 NA other upstream 1193519 18056111 ~ 18058392 (-)
G1044692 NA other upstream 1234971 18097563 ~ 18099722 (-)

Expression


Co-expression Network