G1043550


Basic Information

Item Value
gene id G1043550
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17059200 ~ 17085772 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1189239
gcgaatacgcactgcatcgattatatgcaacgcaggacacgccagataaactagtaatatcatcaaccatgtgtagttaactagtgattgttttttataagaagtttaatgctagctagtaatttaccttggcttcttactgcattcgcgtaacaggcaggctcctcgtggagtgcaatgaggcaggtggttagagcgttggactagataactgtaaggttgcaagattgaatccccgagctgacaaggtaaaaatctgtcgttctgcccctgaacaggcagttaacccaccgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctggttaaataaaggtcaaataaaaaaaatagcccCAATGTGCTAAAAATTGACCAACCCGTCTGGCATTTGCCCGAAATGCCAAATGGCCAGTCCGCCCCAACTTGAATCTAACCTATCACAAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1189239 True 468 lncRNA 0.43 2 17059200 17085772

Neighbor

gene id symbol gene type direction distance location
LOC110537074 LOC106562412 coding downstream 17295 16940427 ~ 17041905 (-)
LOC100305243 LOC106562364 coding downstream 420249 16634735 ~ 16638951 (-)
LOC110537069 LOC106568328 coding downstream 429080 16616367 ~ 16630120 (-)
LOC110537062 csn4 coding downstream 482353 16569486 ~ 16576847 (-)
LOC110537061 LOC106568319 coding downstream 510127 16417638 ~ 16549073 (-)
LOC110537079 rilpl1 coding upstream 25991 17111763 ~ 17129179 (-)
LOC118937877 NA coding upstream 50174 17135946 ~ 17137974 (-)
LOC110537083 elovl2 coding upstream 93715 17179487 ~ 17180486 (-)
LOC110537086 LOC106568301 coding upstream 164300 17250072 ~ 17256274 (-)
ddx55 ddx55 coding upstream 183905 17269677 ~ 17275098 (-)
G1043548 NA non-coding downstream 4844 17053580 ~ 17054356 (-)
G1043515 NA non-coding downstream 56510 17001047 ~ 17002690 (-)
G1043488 NA non-coding downstream 134057 16923503 ~ 16925143 (-)
G1043482 LOC106562392 non-coding downstream 143529 16915326 ~ 16915671 (-)
G1043577 NA non-coding upstream 53399 17139171 ~ 17139473 (-)
G1043584 LOC106568292 non-coding upstream 70180 17155952 ~ 17156375 (-)
G1043589 NA non-coding upstream 81043 17166815 ~ 17167321 (-)
G1043567 LOC106561138 non-coding upstream 150695 17236467 ~ 17239891 (-)
G1043633 NA non-coding upstream 157725 17243497 ~ 17243760 (-)
LOC110537059 LOC106568318 other downstream 731086 16324956 ~ 16328168 (-)
G1042500 NA other downstream 954317 16104163 ~ 16104883 (-)
G1040432 LOC106568413 other downstream 2748148 14307600 ~ 14311052 (-)
G1040300 NA other downstream 2879059 14178658 ~ 14180141 (-)
G1044482 NA other upstream 610357 17696129 ~ 17697105 (-)
G1044649 LOC106568140 other upstream 932332 18018104 ~ 18018758 (-)
G1044671 NA other upstream 970339 18056111 ~ 18058392 (-)
G1044692 NA other upstream 1011791 18097563 ~ 18099722 (-)
G1044761 NA other upstream 1106462 18192234 ~ 18193223 (-)

Expression


Co-expression Network