G1044513


Basic Information

Item Value
gene id G1044513
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17729503 ~ 17732067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1190372
cttcacggtaaggtctactacacttcacggaaaggtctactacacttcacggtaaggtctactacacttcacggtaaggtctactacacttcacggtaaggtctactacacttcacagtaaggtctactacacctgttgtatttggtgcatttgacaaataaaaatcatATTTTGATCTCTCATTCGACTTCCCATTATCTCTGTCTTTTATAGTAGCCTATTTCAACAATGGTTTCACTTTCACACGTGCCTCTAATTGATCAAATCCCTCTATGTTATATGCATTAGTATCTAACAGATGCACTGACGTGATAAAATTCTATGATATAGCCTGTCAATATA
>TU1190373
aaggtctactacacttcacggtaaggtatactacacttcacggtaaggtctactacacttcacggtaaggtctactacatttcacggtaaggtctactacacttcacagtaaggtctactacacttcatggtaaggtctactacacttcacggtaaggtctactacacttcacggtaaggtctactacatttcacagtaaggtctactacacttcacggaaaggtctactacacttcacggtaaggtctactac
>TU1190374
ATCTATATCTGATGAGCCAGTCTGTACTTTCTGCAAAAGTCCCATCTGTCTCTAAAAACACACTCTGCAAAACGTAGGGTCTTCCAACAGAGCATGAATAGCCAtctgcatttcacggtaaggtctactacacttcacggaaaggtctactacacttcacGGTAAGGTATACTACACTTCACGgaaaggtctactacacttcacggaaaggtctactacacttcacggtaaggtctactac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1190372 False 343 lncRNA 0.38 2 17729503 17731165
TU1190373 False 254 lncRNA 0.43 2 17730903 17731640
TU1190374 True 241 lncRNA 0.44 2 17730903 17732067

Neighbor

gene id symbol gene type direction distance location
LOC110537102 LOC106568267 coding downstream 259 17721177 ~ 17729244 (-)
LOC110537100 LOC106568268 coding downstream 19266 17681785 ~ 17710237 (-)
LOC110537096 LOC106562702 coding downstream 152966 17557135 ~ 17576537 (-)
LOC110537091 LOC106568276 coding downstream 205116 17502204 ~ 17524387 (-)
LOC110537089 tmed2 coding downstream 450365 17275246 ~ 17279138 (-)
LOC110536806 LOC106568132 coding upstream 21896 17753963 ~ 17808512 (-)
LOC110537108 LOC106563398 coding upstream 128033 17860100 ~ 17863387 (-)
LOC110537109 pp2bc coding upstream 159827 17891894 ~ 17912969 (-)
LOC100135895 LOC100135895 coding upstream 203661 17935728 ~ 17940707 (-)
LOC118937764 NA coding upstream 229909 17961976 ~ 17964065 (-)
G1044488 NA non-coding downstream 22962 17706263 ~ 17706541 (-)
G1044486 NA non-coding downstream 25925 17703165 ~ 17703578 (-)
G1043996 NA non-coding downstream 48619 17680677 ~ 17680884 (-)
G1043986 NA non-coding downstream 57562 17671644 ~ 17671941 (-)
G1043950 LOC106568269 non-coding downstream 76819 17652288 ~ 17652684 (-)
G1044516 NA non-coding upstream 3819 17735886 ~ 17736114 (-)
G1044517 NA non-coding upstream 4306 17736373 ~ 17736643 (-)
G1044526 NA non-coding upstream 12933 17745000 ~ 17745200 (-)
G1044500 NA non-coding upstream 20127 17752194 ~ 17752956 (-)
G1044534 NA non-coding upstream 28381 17760448 ~ 17760670 (-)
G1044482 NA other downstream 32398 17696129 ~ 17697105 (-)
LOC110537077 LOC106568284 other downstream 661618 17065241 ~ 17068020 (-)
LOC110537061 LOC106568319 other downstream 1184777 16417638 ~ 16549073 (-)
LOC110537059 LOC106568318 other downstream 1401389 16324956 ~ 16328168 (-)
G1042500 NA other downstream 1624620 16104163 ~ 16104883 (-)
G1044649 LOC106568140 other upstream 286037 18018104 ~ 18018758 (-)
G1044671 NA other upstream 324044 18056111 ~ 18058392 (-)
G1044692 NA other upstream 365496 18097563 ~ 18099722 (-)
G1044761 NA other upstream 460167 18192234 ~ 18193223 (-)
LOC110537121 LOC106568150 other upstream 714614 18439759 ~ 18458056 (-)

Expression


Co-expression Network