G1045309 (LOC100846954)


Basic Information

Item Value
gene id G1045309
gene name LOC100846954
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18858224 ~ 18858637 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1191255
acacccccaaagcatgtttccacctccatgtttgacggtggggatggtgttcttggggtcataggtagcattcctcctcctccaaacacagcgagttgagttgatgccaaagagctccattttggtctcatctgaccacaacactttcacccagttgtcctctgaatcattcagatgttcattggcaaacttcagacgggcatgtatatgtactttcttgagcagggggaccttgcggacgctgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattgacaagatcctcccgtgtagttctgggctgatttctcactgttctcatgatcattgcaactccacaaggtgagatcttgcatggagcccc

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1191255 True 414 lncRNA 0.49 1 18858224 18858637

Neighbor

gene id symbol gene type direction distance location
fgf10a LOC106568156 coding downstream 111645 18723193 ~ 18746579 (-)
ccdc80l2 LOC106568154 coding downstream 292132 18560756 ~ 18566092 (-)
LOC118937637 LOC106611709 coding downstream 300213 18545785 ~ 18558011 (-)
LOC110537126 fyb coding downstream 319599 18513211 ~ 18538625 (-)
rbp4l purp coding downstream 369551 18486339 ~ 18488673 (-)
LOC110536808 NA coding upstream 79581 18938218 ~ 18949907 (-)
LOC110536809 amacr coding upstream 112778 18971415 ~ 18994913 (-)
LOC110539127 LOC106568258 coding upstream 185487 19044124 ~ 19050623 (-)
LOC110536810 LOC106568158 coding upstream 207396 19066033 ~ 19077328 (-)
LOC110537133 LOC106563626 coding upstream 221017 19079654 ~ 19085444 (-)
G1045295 NA non-coding downstream 31347 18826638 ~ 18826877 (-)
G1045203 NA non-coding downstream 42295 18815511 ~ 18815929 (-)
G1045172 NA non-coding downstream 65989 18792021 ~ 18792235 (-)
G1045161 NA non-coding downstream 71653 18786307 ~ 18786571 (-)
G1045141 NA non-coding downstream 91197 18763920 ~ 18767027 (-)
G1045314 NA non-coding upstream 6696 18865333 ~ 18906884 (-)
G1045330 NA non-coding upstream 22497 18881134 ~ 18881920 (-)
G1045351 NA non-coding upstream 54443 18913080 ~ 18913767 (-)
G1045360 NA non-coding upstream 72257 18930894 ~ 18931267 (-)
G1045363 LOC106568242 non-coding upstream 74570 18933207 ~ 18933599 (-)
G1045201 NA other downstream 42830 18813902 ~ 18815394 (-)
LOC110537121 LOC106568150 other downstream 410973 18439759 ~ 18458056 (-)
G1044761 NA other downstream 665001 18192234 ~ 18193223 (-)
G1044692 NA other downstream 758502 18097563 ~ 18099722 (-)
G1044671 NA other downstream 799832 18056111 ~ 18058392 (-)
LOC110537130 LOC106568157 other upstream 1225 18833119 ~ 18907377 (-)
LOC110537144 LOC106568168 other upstream 697641 19550953 ~ 19569458 (-)
LOC110536814 LOC106568181 other upstream 1055202 19893417 ~ 19938584 (-)
G1047325 NA other upstream 1636928 20495565 ~ 20496428 (-)
LOC110537156 LOC106568185 other upstream 1650979 20488123 ~ 20599476 (-)

Expression


Co-expression Network