Gene
RNA
| Item | Value |
|---|---|
| gene id | G1045427 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 18974389 ~ 18974626 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: tripartite motif-containing protein 16-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1191378 | True | 238 | lncRNA | 0.55 | 1 | 18974389 | 18974626 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110536808 | NA | coding | downstream | 24482 | 18938218 ~ 18949907 (-) |
| LOC110537130 | LOC106568157 | coding | downstream | 67012 | 18833119 ~ 18907377 (-) |
| fgf10a | LOC106568156 | coding | downstream | 227810 | 18723193 ~ 18746579 (-) |
| ccdc80l2 | LOC106568154 | coding | downstream | 408297 | 18560756 ~ 18566092 (-) |
| LOC118937637 | LOC106611709 | coding | downstream | 416378 | 18545785 ~ 18558011 (-) |
| LOC110539127 | LOC106568258 | coding | upstream | 69498 | 19044124 ~ 19050623 (-) |
| LOC110536810 | LOC106568158 | coding | upstream | 91407 | 19066033 ~ 19077328 (-) |
| LOC110537133 | LOC106563626 | coding | upstream | 105028 | 19079654 ~ 19085444 (-) |
| abraxas1 | ccd98 | coding | upstream | 111726 | 19086352 ~ 19090080 (-) |
| LOC110537135 | LOC106568160 | coding | upstream | 313269 | 19287895 ~ 19291902 (-) |
| G1045426 | NA | non-coding | downstream | 1842 | 18972293 ~ 18972547 (-) |
| G1045407 | NA | non-coding | downstream | 14814 | 18959259 ~ 18959575 (-) |
| G1045365 | NA | non-coding | downstream | 40160 | 18934021 ~ 18934229 (-) |
| G1045364 | rxfp3 | non-coding | downstream | 40406 | 18933704 ~ 18933983 (-) |
| G1045363 | LOC106568242 | non-coding | downstream | 40790 | 18933207 ~ 18933599 (-) |
| G1045429 | NA | non-coding | upstream | 2991 | 18977617 ~ 18977853 (-) |
| G1045431 | NA | non-coding | upstream | 4490 | 18979116 ~ 18979377 (-) |
| G1045433 | NA | non-coding | upstream | 9347 | 18983973 ~ 18984225 (-) |
| G1045435 | NA | non-coding | upstream | 9750 | 18984376 ~ 18984597 (-) |
| G1045448 | NA | non-coding | upstream | 17578 | 18992204 ~ 18992424 (-) |
| G1045201 | NA | other | downstream | 158995 | 18813902 ~ 18815394 (-) |
| LOC110537121 | LOC106568150 | other | downstream | 527138 | 18439759 ~ 18458056 (-) |
| G1044761 | NA | other | downstream | 781166 | 18192234 ~ 18193223 (-) |
| G1044692 | NA | other | downstream | 874667 | 18097563 ~ 18099722 (-) |
| LOC110537144 | LOC106568168 | other | upstream | 581652 | 19550953 ~ 19569458 (-) |
| LOC110536814 | LOC106568181 | other | upstream | 939213 | 19893417 ~ 19938584 (-) |
| G1047325 | NA | other | upstream | 1520939 | 20495565 ~ 20496428 (-) |
| LOC110537156 | LOC106568185 | other | upstream | 1534990 | 20488123 ~ 20599476 (-) |
| G1047473 | NA | other | upstream | 1726914 | 20701540 ~ 20702040 (-) |
