G1046373


Basic Information

Item Value
gene id G1046373
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 19743014 ~ 19745160 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1192509
TATTATACTGAACAGGTTGCAGGTTTTATTATACTTAGAAATTATACAAAACTTTCAACCAAAGAAACTTGACAAATTTTAATGATTCAATTTGTAAAATATATTGCATGCCTAAGTTGTCAGACTAAAGTCATTTGAACAGCACCATTATACGAGGCATGGATCAAGAACTTCTGGCATAACCACGAAATCTCAGTTGAATACAAGATACATAAATCAGACAAACACTCAAATGCTACTTGACTAGTCAGCCCAAAGCAAACAGAATGTTCAAGGTGTCTGGTCATTTAGAAAAAGAGAAAATACAAACAAAAACATGTAAAAGGGTTTAGTTGTCATTGTTGTTATAAGCCTTTGGCAGAAGAGAAGGCCTTCTGAGCGGAATATTTGGAGTACAAATATTCCCCTTTGTATTAGAGAGGTTGATTTGTACAGACAAACCCAAATCCAAACAGCTTAACAAAGTCTTCTTGACATCTaaactggagggggggggggaattaaaAGGGGCTTAAATGAGTGGAGGATGCTGTCTTAATCACAATGTCCATGTTACATCCTCAAATCACAATGTCCATGTAACATCCTCAAATCACAATGTCCATGTAACATCCTCAAATCACAATGTCCATGTAACACACGGCAATACTTATGACTCAATCATGGCATGTAGAGGGAAAGACATCAGCATATGGATTTAAGTTCAAACAAAATGACCAAGCCATCTGAGAGCAATCATGTAAGTGCATTTCTCCTCAACATACGTACATTCAATACTTTACCCACATGAGAAGAACAGTAACTCCATGATGTGGATTTAAATGAAGATCCCATCCTTGTAAAGTATTGTACTCTCATTCGGTGTCTGAACAACAGTTCATGTTGTTTTCCCAACATACATTTTTGTGAGAACAATACAATTCCCTCAGCCACCAATAAGTGGTTGTCCTAACCTCTTAACATAACTTCTAGGCTTTTGTTCAAAACAAAATGCATACTGTACTTATTTTATAAGTTAAAAACAGGATGTAAAACATCTGAAGATAGGGGTGTAGAGCGAGCTGGTCAATACACCCCTCTTCATGAGAAATGTGGGGGTGTTAATCCTTCGAGATGTAACTGCAGTCAGAGGCCAAACTGTTCAATGTCACGCCACTATCAGAAATCAGCCACAACAGAAGATATAGAGAGGAAGGGAAACGTTCAAATCATGTTATTCACAACTTTAAACCTCTATCAATCTTGAGCTCTGTATTTAGCACTCCAAAAGTTGCAGTGTCTCAATCTGTCCCTTTAATTGAGGATCCTCCTGTGACCCCTGGAGACCTCCTTAGTGAACTTTCTCCAGCTTGGCCTGCAGGGCCTTGAAGTTGCCGATGGTGAGCTGCAGGGCAGAGTTCAGACTCAGGGACTGCAGCTCCACCAGGTAACCACAGATGTTATCCAGACACATTAGTGAACCGCCGtctgaaagggacagagagaaataTGAGTAAGACAGTGCATATTAAAACACATTTCACAAACACTCACATTCTCATTACTATGTAAACAGGTTGATATGTTTCCAAATAAGGAGCATTTCTAATGGAGACAGGAGAAAAGGTTAACACTTGGTGGTGGGTTAGTTACCGGTCATATGTTGGTACTTTGCTGGGATCCTCCACGTATCCTGACAGCAGCACATGGATACACTCTACCAGGTGGACAGGTTTCTTTAGACGCTGCCAACACGTATCCTGACAGCAGCACATGGATACACTCTACCAGGTGGACAGGCTTCTTTAGACGCTGCCAACACGTATCCTGACAGCAGCACATGGATACACTCTACCAGGTGGACAGGCTTCTTTAGACGCTGCCAACACGTATCCTGGGATACACACAGCCAGAGTTGGAGACATCCAGTATTAAGTGTACAGCGCCATTCCTTATTAAATAATGCTAAATCTGAAATTCATTATAACCCTTTATTATTAAGGGCATCTATTCAtatcaagggggggggggggg
>TU1192505
TATTATACTGAACAGGTTGCAGGTTTTATTATACTTAGAAATTATACAAAACTTTCAACCAAAGAAACTTGACAAATTTTAATGATTCAATTTGTAAAATATATTGCATGCCTAAGTTGTCAGACTAAAGTCATTTGAACAGCACCATTATACGAGGCATGGATCAAGAACTTCTGGCATAACCACGAAATCTCAGTTGAATACAAGATACATAAATCAGACAAACACTCAAATGCTACTTGACTAGTCAGCCCAAAGCAAACAGAATGTTCAAGGTGTCTGGTCATTTAGAAAAAGAGAAAATACAAACAAAAACATGTAAAAGGGTTTAGTTGTCATTGTTGTTATAAGCCTTTGGCAGAAGAGAAGGCCTTCTGAGCGGAATATTTGGAGTACAAATATTCCCCTTTGTATTAGAGAGGTTGATTTGTACAGACAAACCCAAATCCAAACAGCTTAACAAAGTCTTCTTGACATCTaaactggagggggggggggaattaaaAGGGGCTTAAATGAGTGGAGGATGCTGTCTTAATCACAATGTCCATGTTACATCCTCAAATCACAATGTCCATGTAACATCCTCAAATCACAATGTCCATGTAACATCCTCAAATCACAATGTCCATGTAACACACGGCAATACTTATGACTCAATCATGGCATGTAGAGGGAAAGACATCAGCATATGGATTTAAGTTCAAACAAAATGACCAAGCCATCTGAGAGCAATCATGTAAGTGCATTTCTCCTCAACATACGTACATTCAATACTTTACCCACATGAGAAGAACAGTAACTCCATGATGTGGATTTAAATGAAGATCCCATCCTTGTAAAGTATTGTACTCTCATTCGGTGTCTGAACAACAGTTCATGTTGTTTTCCCAACATACATTTTTGTGAGAACAATACAATTCCCTCAGCCACCAATAAGTGGTTGTCCTAACCTCTTAACATAACTTCTAGGCTTTTGTTCAAAACAAAATGCATACTGTACTTATTTTATAAGTTAAAAACAGGATGTAAAACATCTGAAGATAGGGGTGTAGAGCGAGCTGGTCAATACACCCCTCTTCATGAGAAATGTGGGGGTGTTAATCCTTCGAGATGTAACTGCAGTCAGAGGCCAAACTGTTCAATGTCACGCCACTATCAGAAATCAGCCACAACAGAAGATATAGAGAGGAAGGGAAACGTTCAAATCATGTTATTCACAACTTTAAACCTCTATCAATCTTGAGCTCTGTATTTAGCACTCCAAAAGTTGCAGTGTCTCAATCTGTCCCTTTAATTGAGGATCCTCCTGTGACCCCTGGAGACCTCCTTAGTGAACTTTCTCCAGCTTGGCCTGCAGGGCCTTGAAGTTGCCGATGGTGAGCTGCAGGGCAGAGTTCAGACTCAGGGACTGCAGCTCCACCAGGTAACCACAGATGTTATCCAGACACATTAGTGAACCGCCGtctgaaagggacagagagaaataTGAGTAAGACAGTGCATATTAAAACACATTTCACAAACACTCACATTCTCATTACTATGTAAACAGGTTGATATGTTTCCAAATAAGGAGCATTTCTAATGGAGACAGGAGAAAAGGTTAACACTTGGTGGTGGGTTAGTTACCGGTCATATGTTGGTACTTTGCTGGGATCCTCCACGTATCCTGACAGCAGCACATGGATACACTCTACCAGGTGGACAGGTTTCTTTAGACGCTGCCAACACGTATCCTGACAGCAGCACATGGATACACTCTACCAGGTGGACAGGCTTCTTTAGACGCTGCCAACACGTATCCTGACAGCAGCACATGGATACACTCTACCAGGTGGACAGGCTTCTTTAGACGCTGCCAACACGTATCCTGGGATACACACAGCCAGAGTTGGAGACATCCAGTATTAAGTGTACAGCGCCATTCCTTATT
>TU1192506
TATTATACTGAACAGGTTGCAGGTTTTATTATACTTAGAAATTATACAAAACTTTCAACCAAAGAAACTTGACAAATTTTAATGATTCAATTTGTAAAATATATTGCATGCCTAAGTTGTCAGACTAAAGTCATTTGAACAGCACCATTATACGAGGCATGGATCAAGAACTTCTGGCATAACCACGAAATCTCAGTTGAATACAAGATACATAAATCAGACAAACACTCAAATGCTACTTGACTAGTCAGCCCAAAGCAAACAGAATGTTCAAGGTGTCTGGTCATTTAGAAAAAGAGAAAATACAAACAAAAACATGTAAAAGGGTTTAGTTGTCATTGTTGTTATAAGCCTTTGGCAGAAGAGAAGGCCTTCTGAGCGGAATATTTGGAGTACAAATATTCCCCTTTGTATTAGAGAGGTTGATTTGTACAGACAAACCCAAATCCAAACAGCTTAACAAAGTCTTCTTGACATCTaaactggagggggggggggaattaaaAGGGGCTTAAATGAGTGGAGGATGCTGTCTTAATCACAATGTCCATGTTACATCCTCAAATCACAATGTCCATGTAACATCCTCAAATCACAATGTCCATGTAACATCCTCAAATCACAATGTCCATGTAACACACGGCAATACTTATGACTCAATCATGGCATGTAGAGGGAAAGACATCAGCATATGGATTTAAGTTCAAACAAAATGACCAAGCCATCTGAGAGCAATCATGTAAGTGCATTTCTCCTCAACATACGTACATTCAATACTTTACCCACATGAGAAGAACAGTAACTCCATGATGTGGATTTAAATGAAGATCCCATCCTTGTAAAGTATTGTACTCTCATTCGGTGTCTGAACAACAGTTCATGTTGTTTTCCCAACATACATTTTTGTGAGAACAATACAATTCCCTCAGCCACCAATAAGTGGTTGTCCTAACCTCTTAACATAACTTCTAGGCTTTTGTTCAAAACAAAATGCATACTGTACTTATTTTATAAGTTAAAAACAGGATGTAAAACATCTGAAGATAGGGGTGTAGAGCGAGCTGGTCAATACACCCCTCTTCATGAGAAATGTGGGGGTGTTAATCCTTCGAGATGTAACTGCAGTCAGAGGCCAAACTGTTCAATGTCACGCCACTATCAGAAATCAGCCACAACAGAAGATATAGAGAGGAAGGGAAACGTTCAAATCATGTTATTCACAACTTTAAACCTCTATCAATCTTGAGCTCTGTATTTAGCACTCCAAAAGTTGCAGTGTCTCAATCTGTCCCTTTAATTGAGGATCCTCCTGTGACCCCTGGAGACCTCCTTAGTGAACTTTCTCCAGCTTGGCCTGCAGGGCCTTGAAGTTGCCGATGGTGAGCTGCAGGGCAGAGTTCAGACTCAGGGACTGCAGCTCCACCAGGTAACCACAGATGTTATCCAGACACATTAGTGAACCGCCGtctgaaagggacagagagaaataTGAGTAAGACAGTGCATATTAAAACACATTTCACAAACACTCACATTCTCATTACTATGTAAACAGGTTGATATGTTTCCAAATAAGGAGCATTTCTAATGGAGACAGGAGAAAAGGTTAACACTTGGTGGTGGGTTAGTTACCGGTCATATGTTGGTACTTTGCTGGGATCCTCCACGTATCCTGACAGCAGCACATGGATACACTCTACCAGGTGGACAGGTTTCTTTAGACGCTGCCAACACGTATCCTGACAGCAGCACATGGATACACTCTACCAGGTGGACAGGCTTCTTTAGACGCTGCCAACACGTATCCTGGGATACACACAGCCAGAGTTGGAGACATCCAGTATTAAGTGTACAGCGCCATTCCTTATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1192509 False 2013 lncRNA 0.41 3 19743014 19745160
TU1192505 False 1936 lncRNA 0.41 3 19743091 19745160
TU1192506 True 1869 lncRNA 0.40 3 19743091 19745160

Neighbor

gene id symbol gene type direction distance location
LOC110537146 LOC106568171 coding downstream 136930 19580903 ~ 19606084 (-)
LOC118937638 NA coding downstream 162780 19578405 ~ 19580234 (-)
LOC110537144 LOC106568168 coding downstream 173556 19550953 ~ 19569458 (-)
LOC110537143 LOC106568167 coding downstream 207833 19459368 ~ 19535181 (-)
LOC101268945 LOC106568165 coding downstream 293795 19445394 ~ 19449219 (-)
LOC110539128 LOC106568259 coding upstream 1151 19746311 ~ 19747504 (-)
LOC110536814 LOC106568181 coding upstream 152168 19893417 ~ 19938584 (-)
LOC110537153 LOC106568182 coding upstream 196346 19941506 ~ 19978680 (-)
LOC110536815 LOC106568184 coding upstream 629175 20374335 ~ 20487549 (-)
LOC110537156 LOC106568185 coding upstream 742963 20488123 ~ 20599476 (-)
G1046295 NA non-coding downstream 98421 19641826 ~ 19644593 (-)
G1046252 NA non-coding downstream 164637 19577943 ~ 19578377 (-)
G1046248 NA non-coding downstream 166129 19576363 ~ 19576885 (-)
G1046438 NA non-coding upstream 97729 19842889 ~ 19843293 (-)
G1046456 NA non-coding upstream 111028 19856188 ~ 19856448 (-)
G1046537 NA non-coding upstream 127392 19872552 ~ 19872821 (-)
G1046538 LOC106568180 non-coding upstream 128281 19873441 ~ 19873799 (-)
G1046539 NA non-coding upstream 129304 19874464 ~ 19874919 (-)
LOC110537130 LOC106568157 other downstream 837908 18833119 ~ 18907377 (-)
G1045201 NA other downstream 927620 18813902 ~ 18815394 (-)
LOC110537121 LOC106568150 other downstream 1295763 18439759 ~ 18458056 (-)
G1044761 NA other downstream 1549791 18192234 ~ 18193223 (-)
G1047325 NA other upstream 750405 20495565 ~ 20496428 (-)
G1047473 NA other upstream 956380 20701540 ~ 20702040 (-)
LOC110537162 LOC106568189 other upstream 1117432 20862558 ~ 20888980 (-)

Expression


Co-expression Network