G1046545


Basic Information

Item Value
gene id G1046545
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 19878366 ~ 19879122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1192700
ATCATTATTGGATACTGTGTAACCATCCCTAGGTACAACAGTCTAAAACTTAATGGATTTTAACCTGTTTTGAAACAATAAACCTTCCCAAGTAGTCAACTCTCAACTTTGTGACAACAATAAGAATAGAagtataataatattattattaataaataataataagtaCACAACCTCAATGGAATACATTAGAATAATACTGAAATAAAATCTGTCACCTTGATATAGGCGCTGGGGTAGATCTTGTGCACTGCGTCTCCAGGGGCCCGTCCTGCCTCCCTGTCCAAGTAATAACTCTGCACAAACACTGCATGATCACTAAGGCAACGCACCCACACGTCACCTTCCCCTTTACACTCCAGCTGCACCCCTTTACCAATGTGAAGTCTAAAgccaggaaggaaggaaagaagcaGATGGAGACAAACAGTAAAAGCCTTCACATTTTGCTAGTGTATTTTTCCAAAACTATGAATGATGTTCTGCTTAGTCATTTCATTTAGCAAAGACATTAAATCATTACTTGTTCTATAAATCTTTCCTTTTTCTATTTGATATGGTAGGTTCATGACTTTGGCCTGGGGtgggtttatgacagtcataaatacctcttccccactgatgtgacatttgaaaaccccttggttaacatagagattctgggaacatcagaaggtggggggaaatgaactagattctggtaatccgaccaattgaacatatgcggtggtacttaatgaatatgatgtcagttcgg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1192700 True 757 lncRNA 0.39 1 19878366 19879122

Neighbor

gene id symbol gene type direction distance location
LOC110539128 LOC106568259 coding downstream 130862 19746311 ~ 19747504 (-)
LOC110537146 LOC106568171 coding downstream 272282 19580903 ~ 19606084 (-)
LOC118937638 NA coding downstream 298132 19578405 ~ 19580234 (-)
LOC110537144 LOC106568168 coding downstream 308908 19550953 ~ 19569458 (-)
LOC110537143 LOC106568167 coding downstream 343185 19459368 ~ 19535181 (-)
LOC110536814 LOC106568181 coding upstream 18206 19893417 ~ 19938584 (-)
LOC110537153 LOC106568182 coding upstream 62384 19941506 ~ 19978680 (-)
LOC110536815 LOC106568184 coding upstream 495213 20374335 ~ 20487549 (-)
LOC110537156 LOC106568185 coding upstream 609001 20488123 ~ 20599476 (-)
LOC110537157 LOC101448024 coding upstream 728851 20607973 ~ 20638681 (-)
G1046543 NA non-coding downstream 1095 19876954 ~ 19877271 (-)
G1046542 NA non-coding downstream 1582 19876548 ~ 19876784 (-)
G1046541 NA non-coding downstream 1888 19876252 ~ 19876478 (-)
G1046540 NA non-coding downstream 2298 19875822 ~ 19876068 (-)
G1046539 NA non-coding downstream 3447 19874464 ~ 19874919 (-)
G1046554 NA non-coding upstream 8181 19887303 ~ 19887637 (-)
G1046556 NA non-coding upstream 9465 19888587 ~ 19888836 (-)
G1046558 LOC107575789 non-coding upstream 11158 19890280 ~ 19890515 (-)
G1046559 NA non-coding upstream 11930 19891052 ~ 19891866 (-)
G1046560 NA non-coding upstream 13575 19892697 ~ 19892936 (-)
LOC110537130 LOC106568157 other downstream 973260 18833119 ~ 18907377 (-)
G1045201 NA other downstream 1062972 18813902 ~ 18815394 (-)
LOC110537121 LOC106568150 other downstream 1431115 18439759 ~ 18458056 (-)
G1044761 NA other downstream 1685143 18192234 ~ 18193223 (-)
G1047325 NA other upstream 616443 20495565 ~ 20496428 (-)
G1047473 NA other upstream 822418 20701540 ~ 20702040 (-)
LOC110537162 LOC106568189 other upstream 983470 20862558 ~ 20888980 (-)

Expression


Co-expression Network